Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H09
         (200 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28100.3 68414.m03442 expressed protein                             26   3.0  
At1g28100.2 68414.m03441 expressed protein                             26   3.0  
At1g28100.1 68414.m03440 expressed protein                             26   3.0  
At2g39990.1 68415.m04914 eukaryotic translation initiation facto...    25   5.2  
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    25   6.9  
At5g64220.1 68418.m08067 calmodulin-binding protein similar to a...    25   9.2  

>At1g28100.3 68414.m03442 expressed protein
          Length = 290

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +1

Query: 163 SPPTTCAWSAR 195
           +PPT+CAW+AR
Sbjct: 81  NPPTSCAWAAR 91


>At1g28100.2 68414.m03441 expressed protein
          Length = 282

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +1

Query: 163 SPPTTCAWSAR 195
           +PPT+CAW+AR
Sbjct: 81  NPPTSCAWAAR 91


>At1g28100.1 68414.m03440 expressed protein
          Length = 282

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +1

Query: 163 SPPTTCAWSAR 195
           +PPT+CAW+AR
Sbjct: 81  NPPTSCAWAAR 91


>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
           subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
           SP|O04202 Eukaryotic translation initiation factor 3
           subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 293

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 176 VVGGELAPLGQVAHYVEQPVAHAPR 102
           VVGG++AP   +  ++   VA  P+
Sbjct: 225 VVGGQIAPDNNIGRFIADAVASLPK 249


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 169 GVSSRRSARSRIMLNSQSRMRRGKSDISFSLHSGISLQV 53
           G     S   +I++  QS +RR K    FSL S +   V
Sbjct: 105 GAKDAASRIKKIVVELQSALRRSKKGGEFSLESDVDAYV 143


>At5g64220.1 68418.m08067 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from[Nicotiana tabacum]
          Length = 1050

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 6   LCRGAQYHHV-QIEYYGTCREMPECSENEMSDF 101
           LC  A  H V ++ +Y TC +   CSE    DF
Sbjct: 515 LCCHAPPHEVGRVPFYITCSDRFSCSEVREFDF 547


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.122    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,889,250
Number of Sequences: 28952
Number of extensions: 57373
Number of successful extensions: 224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,070,560
effective HSP length: 46
effective length of database: 10,738,768
effective search space used: 214775360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)