Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_H08
(633 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 247 5e-66
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 247 5e-66
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 247 5e-66
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 247 5e-66
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 141 3e-34
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 80 1e-15
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 62 2e-10
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 45 4e-05
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 39 0.002
At4g27900.2 68417.m04005 expressed protein 32 0.36
At4g27900.1 68417.m04004 expressed protein 32 0.36
At1g45160.1 68414.m05177 protein kinase family protein contains ... 31 0.84
At1g28280.1 68414.m03471 VQ motif-containing protein contains PF... 29 1.9
At5g63950.1 68418.m08030 SNF2 domain-containing protein / helica... 28 4.5
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica... 28 4.5
At5g11940.1 68418.m01396 subtilase family protein contains simil... 28 5.9
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 27 7.8
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 247 bits (604), Expect = 5e-66
Identities = 109/154 (70%), Positives = 136/154 (88%)
Frame = +1
Query: 1 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 180
VKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P +GAA+FT+QVI++N
Sbjct: 277 VKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMN 336
Query: 181 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 360
HPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+K
Sbjct: 337 HPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTK 396
Query: 361 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 462
P+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 247 bits (604), Expect = 5e-66
Identities = 109/154 (70%), Positives = 136/154 (88%)
Frame = +1
Query: 1 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 180
VKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P +GAA+FT+QVI++N
Sbjct: 277 VKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMN 336
Query: 181 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 360
HPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+K
Sbjct: 337 HPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTK 396
Query: 361 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 462
P+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 247 bits (604), Expect = 5e-66
Identities = 109/154 (70%), Positives = 136/154 (88%)
Frame = +1
Query: 1 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 180
VKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P +GAA+FT+QVI++N
Sbjct: 277 VKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMN 336
Query: 181 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 360
HPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+K
Sbjct: 337 HPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTK 396
Query: 361 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 462
P+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 247 bits (604), Expect = 5e-66
Identities = 109/154 (70%), Positives = 136/154 (88%)
Frame = +1
Query: 1 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 180
VKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P +GAA+FT+QVI++N
Sbjct: 277 VKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMN 336
Query: 181 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 360
HPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+K
Sbjct: 337 HPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTK 396
Query: 361 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 462
P+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 141 bits (342), Expect = 3e-34
Identities = 61/95 (64%), Positives = 77/95 (81%)
Frame = +1
Query: 175 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVP 354
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60
Query: 355 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 459
+KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V
Sbjct: 61 TKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 80.2 bits (189), Expect = 1e-15
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Frame = +1
Query: 1 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 180
V ++ + ++ A PG+N+ + + +++ G+V S NP +F AQ+ +L
Sbjct: 372 VVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFVLS-SIVNPVPAVTEFVAQLQILE 430
Query: 181 --HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVP 354
+ GY +L H C+ E+K ++D +T K + +K+G A + +
Sbjct: 431 LLDNAIFTAGYKAILHIHAVVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQV 490
Query: 355 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 450
+ +C+E F +FP LGRF +R +T+AVG +
Sbjct: 491 TNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 62.5 bits (145), Expect = 2e-10
Identities = 40/153 (26%), Positives = 72/153 (47%)
Frame = +1
Query: 1 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 180
++S+E +A A GDNV ++ + ++ G V + P A V+VL
Sbjct: 512 IRSLERDSQACTIARAGDNVALALQGIDANQVMAGDVLCHP-DFPVSVATHLELMVLVLE 570
Query: 181 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 360
I G H A A ++ +D +TG+ T+ +P+ + + +A++ +
Sbjct: 571 GATPILLGSQLEFHVHHAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQN 630
Query: 361 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 459
P+CVE+F E LGR +R +TVA+G + +
Sbjct: 631 PVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 45.2 bits (102), Expect = 4e-05
Identities = 38/153 (24%), Positives = 66/153 (43%)
Frame = +1
Query: 1 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 180
V VEM + L EA+ GDNVG ++ + +++RG V + P F A + VL
Sbjct: 333 VTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPH--TKFEAIIYVLK 390
Query: 181 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 360
+ ++P + + ++ KV + E++ K + GD + +
Sbjct: 391 K--EEGGRHSPFFAGYRPQFYMRTTDVTGKVTKIMNDKDEES-KMVMPGDRVKIVVELIV 447
Query: 361 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 459
P+ E RFA+R+ +TV GVI +
Sbjct: 448 PVACEQGM------RFAIREGGKTVGAGVIGTI 474
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 39.1 bits (87), Expect = 0.002
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Frame = +1
Query: 1 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 180
V VEM + L GDNVG ++ + ++++RG V +K + F A++ VL
Sbjct: 316 VTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEIYVLT 373
Query: 181 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGD--AAIVNLVP 354
+T + + A+I KV+ +N K + GD A+ L+
Sbjct: 374 K--DEGGRHTAFFSNYRPQFYLRTADITGKVE------LPENVKMVMPGDNVTAVFELIM 425
Query: 355 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 459
PL E+ Q RFA+R+ +TV GV+ V
Sbjct: 426 PVPL--ETGQ------RFALREGGRTVGAGVVSKV 452
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 307 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 399
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 307 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 399
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At1g45160.1 68414.m05177 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 1067
Score = 30.7 bits (66), Expect = 0.84
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +1
Query: 205 YTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESF- 381
Y P CH AC E++ R S +D K IK + N SK + ++SF
Sbjct: 82 YKPKYSCHPPKYACSSTTSSEEIKLRGKNSGKDEEKMIKISE---TNPPCSKSMGIKSFS 138
Query: 382 QEFPPLG 402
E P G
Sbjct: 139 HELGPRG 145
>At1g28280.1 68414.m03471 VQ motif-containing protein contains
PF05678: VQ motif
Length = 247
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 308 LNPLNLVMPPLSTWFPP-SPCVWSPSRNSHPSVVSPCVT 421
+NPLN V P+++ F P P + SPS PS+V VT
Sbjct: 140 INPLNPVFNPVNSAFSPRKPEILSPSILDFPSLVLSPVT 178
>At5g63950.1 68418.m08030 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1090
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 456 SLYYTDGDRLPHVTHGETTEGWEFLEGLHTQGLGGNQVDNGGI 328
+L YT ++ + + EG +L LHTQG GG D+ G+
Sbjct: 364 NLSYTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGL 406
>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q61687
Transcriptional regulator ATRX {Mus musculus}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 816
Score = 28.3 bits (60), Expect = 4.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 253 QICRLCGLCGNPIQVCIRLIF 191
++CR+CGL PI+ I ++F
Sbjct: 197 EVCRVCGLIKKPIESMIEVVF 217
>At5g11940.1 68418.m01396 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 762
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 450 YYTDGDRLPHVTHGETTEGWEFLEGLHTQGLGGNQVDNG 334
Y + + LPH TH +T G F+ + G G + G
Sbjct: 217 YMSARESLPHGTHVASTAGGSFVSNVSDNGFGVGTIRGG 255
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 289 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 462
K+++ +P GD+ IV P KPL + S ++ PP+ + T + ++ VN
Sbjct: 447 KNSKKDPLPSAIGDSKIV--APEKPLALHSAKDSPPIQNNEAK-TEDTPVLSTVQPVN 501
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,170,588
Number of Sequences: 28952
Number of extensions: 344742
Number of successful extensions: 1152
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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