Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H07
         (87 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   1.8  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    23   5.4  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    23   7.2  
SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      22   9.5  

>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 4   LWNCKRGRAVCVLRQLFQH 60
           +WN + G  +C  R+ +QH
Sbjct: 202 IWNSETGEKICEFRRGYQH 220


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 17  KEEEQYVYYANYSNTFLYNNEEQ 85
           KE E+YV  AN   +FLY  +E+
Sbjct: 52  KEPEKYVSDANAIVSFLYWKQEE 74


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 5   YGIVKEEEQYVYYANYSNTFLYNNEE 82
           +G+V  E ++V     S TFL +NE+
Sbjct: 140 HGVVDSETKFVIERKDSFTFLASNEK 165


>SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 44

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 79 FIIVKESVGIVGVIHILLFLFYNSI 5
          F IVKE VG+ G+  I+ FL   SI
Sbjct: 2  FSIVKEEVGLPGM--IIYFLLQISI 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 407,781
Number of Sequences: 5004
Number of extensions: 3700
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 10
effective length of database: 2,312,438
effective search space used: 41623884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)