Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H07
         (87 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0484 + 17665714-17666877                                         26   3.6  
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92...    25   8.4  

>08_02_0484 + 17665714-17666877
          Length = 387

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 83  VLHYCKGKCWNSWRNTHTALPLLQ 12
           +LH   G+ W+  R  H ALPL++
Sbjct: 263 LLHLLTGRQWDGGRLAHWALPLIR 286


>02_01_0125 +
           920128-920392,920491-921839,921921-922084,922340-922370,
           922534-922565,922730-923060,923210-923713
          Length = 891

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 18  KRKSSMCITPTIPTLSFTIMK 80
           K+K S+ +TPT P  +FT ++
Sbjct: 855 KKKRSLSLTPTTPLSNFTALE 875


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,292
Number of Sequences: 37544
Number of extensions: 19427
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 14,793,348
effective HSP length: 10
effective length of database: 14,417,908
effective search space used: 259522344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)