Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H07
         (87 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28176| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_48331| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_28176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 59  CWNSWRNTHTALPL 18
           CWN  R +H ALPL
Sbjct: 437 CWNQRRMSHDALPL 450


>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 4    LWNCKRGRAVCVLR 45
            +W+C  GR  CVLR
Sbjct: 1259 VWHCLHGRTTCVLR 1272


>SB_48331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 86  SVLHYCKGKCWNSWRNT 36
           S LH  KG+ W  WR+T
Sbjct: 324 SRLHDIKGRIWMGWRST 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,160
Number of Sequences: 59808
Number of extensions: 30042
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 16,821,457
effective HSP length: 10
effective length of database: 16,223,377
effective search space used: 292020786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)