Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H07
         (87 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    25   5.2  
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa...    25   9.0  

>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 9   EL*KRKSSMCITPTIPTLSFTIMK 80
           E+ K+    C++P +PT +FT  K
Sbjct: 530 EILKKSLGSCVSPLLPTKNFTYTK 553


>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 248

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 80  LHYCKGKCWNSWRNTHTALPLLQF 9
           LH     C  SW N H   P+ +F
Sbjct: 157 LHLYHSSCIVSWLNIHNTCPICRF 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,046,316
Number of Sequences: 28952
Number of extensions: 17622
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 12,070,560
effective HSP length: 10
effective length of database: 11,781,040
effective search space used: 212058720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)