Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_H06
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 242 2e-65
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 116 3e-27
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 109 3e-25
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 95 6e-21
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 95 8e-21
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 93 2e-20
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 90 2e-19
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 80 2e-16
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 79 3e-16
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 78 1e-15
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 63 3e-11
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 58 6e-10
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 52 4e-08
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 39 5e-04
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 27 1.3
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 2.3
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 26 4.1
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 5.4
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 7.1
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 25 9.4
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 25 9.4
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 242 bits (593), Expect = 2e-65
Identities = 102/152 (67%), Positives = 127/152 (83%)
Frame = +1
Query: 79 MSGIASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTAWEGGLYKL 258
MS + RL EERK WR+DHPFGF A+P K+ DG L+LM W+ IPGK T+WEGGLYKL
Sbjct: 1 MSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKL 60
Query: 259 RMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 438
M F ++YP+ PPKC+F PPLFHPNVYPSGTVCLS+L+EE+ W+PAITIKQILLGIQDLL
Sbjct: 61 TMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL 120
Query: 439 NEPNVKDPAQAEAYTIYCQNRLEYDKRVRAQA 534
++PN+ PAQ EAYT++ ++++EY+KRVRAQA
Sbjct: 121 DDPNIASPAQTEAYTMFKKDKVEYEKRVRAQA 152
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 116 bits (278), Expect = 3e-27
Identities = 60/149 (40%), Positives = 83/149 (55%)
Frame = +1
Query: 79 MSGIASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTAWEGGLYKL 258
MS A RL + K ++D P G A P+ + N+M W I G T +E G +KL
Sbjct: 1 MSTTARRRLMRDFKRMQQDPPAGVSASPVSD-----NVMLWNAVIIGPADTPFEDGTFKL 55
Query: 259 RMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 438
+ F + YP+ PP KF +FHPNVY +G +CL +L + W P + IL IQ LL
Sbjct: 56 VLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDIL--QNRWSPTYDVAAILTSIQSLL 113
Query: 439 NEPNVKDPAQAEAYTIYCQNRLEYDKRVR 525
N+PN PA AEA ++ +N+ EY +RVR
Sbjct: 114 NDPNNASPANAEAAQLHRENKKEYVRRVR 142
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 109 bits (261), Expect = 3e-25
Identities = 61/160 (38%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Frame = +1
Query: 88 IASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTAWEGGLYKLRMI 267
+A RL +E K ++ P G A P D TW+C I G GT +EGGLY +
Sbjct: 5 MALRRLMKEYKELTENGPDGITAGPSNEDD----FFTWDCLIQGPDGTPFEGGLYPATLK 60
Query: 268 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKD-----------WRPAITIKQI 414
F DYP PP KFE FHPNVY GTVC+S+L D W P ++++I
Sbjct: 61 FPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKI 120
Query: 415 LLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDKRVRAQA 534
LL + +L EPN + A +A ++ ++R EY + VR A
Sbjct: 121 LLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLA 160
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 95.1 bits (226), Expect = 6e-21
Identities = 48/133 (36%), Positives = 75/133 (56%)
Frame = +1
Query: 100 RLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTAWEGGLYKLRMIFKDD 279
R+ +E + +D P G VA P ++ NL ++ + G + +A+EGG + L + D+
Sbjct: 6 RIIKEIETLTRDPPPGIVAAPTED-----NLRYFKITMEGPQQSAYEGGKFHLELFLPDE 60
Query: 280 YPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNVKD 459
YP PP +F ++HPNV G +CLS L +KDW PA+ I+ +LL IQ L+ PN D
Sbjct: 61 YPMMPPNVRFLTKIYHPNVDKLGRICLSTL--KKDWSPALQIRTVLLSIQALMGAPNPDD 118
Query: 460 PAQAEAYTIYCQN 498
P + I+ +N
Sbjct: 119 PLDNDVAKIWKEN 131
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 94.7 bits (225), Expect = 8e-21
Identities = 47/120 (39%), Positives = 68/120 (56%)
Frame = +1
Query: 172 PDGSLNLMTWECAIPGKKGTAWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGT 351
PD NL+ W I G T +EG +K+ M F +YP SPP F P++HPNV SG
Sbjct: 52 PDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGN 111
Query: 352 VCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDKRVRAQ 531
+CL +L ++ W ++ ILL +Q LL EPN P A+A ++ ++ +EY KR+ Q
Sbjct: 112 ICLDILKDK--WSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEY-KRLLMQ 168
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 93.1 bits (221), Expect = 2e-20
Identities = 49/146 (33%), Positives = 76/146 (52%)
Frame = +1
Query: 88 IASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTAWEGGLYKLRMI 267
+A R+ E KD P A P+ + +L W+ I G + + GG++ L +
Sbjct: 1 MALKRINRELADLGKDPPSSCSAGPVGD-----DLFHWQATIMGPADSPYAGGVFFLSIH 55
Query: 268 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEP 447
F DYP PPK F ++HPN+ +G++CL +L ++ W PA+TI ++LL I LL +P
Sbjct: 56 FPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSICSLLTDP 113
Query: 448 NVKDPAQAEAYTIYCQNRLEYDKRVR 525
N DP E +Y +R Y+ R
Sbjct: 114 NPDDPLVPEIAHVYKTDRSRYELSAR 139
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 90.2 bits (214), Expect = 2e-19
Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 11/159 (6%)
Frame = +1
Query: 82 SGIASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTAWEGGLYKLR 261
S + L ++ K +K+ P GF + + ++ WE I G + T +EGG +
Sbjct: 3 SSASEQLLRKQLKEIQKNPPQGFSVGLVDDK----SIFEWEVMIIGPEDTLYEGGFFHAT 58
Query: 262 MIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLL-----------DEEKDWRPAITIK 408
+ F DYP PPK KF ++HPNV+P+G VC+S+L D + W P + +
Sbjct: 59 LSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPE 118
Query: 409 QILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDKRVR 525
IL+ + +L+ PN + PA +A + +N E+ KRVR
Sbjct: 119 TILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVR 157
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 80.2 bits (189), Expect = 2e-16
Identities = 39/113 (34%), Positives = 59/113 (52%)
Frame = +1
Query: 187 NLMTWECAIPGKKGTAWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 366
NL W C G + + GG + + F DYP PP +F ++HPN G VCL++
Sbjct: 35 NLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAI 94
Query: 367 LDEEKDWRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDKRVR 525
L +++ ++P+I ++ +L I LL EPN DP A Y +R +DK R
Sbjct: 95 L-KQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIAR 146
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 79.4 bits (187), Expect = 3e-16
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 1/150 (0%)
Frame = +1
Query: 79 MSGIASARLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTAWEGGLYKL 258
MS S R+A+E ++D G + + L M G +GT +EGG + +
Sbjct: 1 MSDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGM-----FRGPEGTPYEGGYFVV 55
Query: 259 RMIFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDWRPAITIKQILLGIQDL 435
+ DYP PPK F+ ++HPNV +G +CL +L ++ W P T+K L+ +Q L
Sbjct: 56 DIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQ--WSPVYTMKSALISLQSL 113
Query: 436 LNEPNVKDPAQAEAYTIYCQNRLEYDKRVR 525
L P +P A+ +Y QN ++ + R
Sbjct: 114 LCTPEPSNPQDAQVAQVYLQNYQQFVRTAR 143
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 77.8 bits (183), Expect = 1e-15
Identities = 36/97 (37%), Positives = 55/97 (56%)
Frame = +1
Query: 235 WEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQI 414
++GG +K R+ D+YP PPK K ++HPN+ G VCL++L +DW P + + I
Sbjct: 65 YKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNIL--RQDWNPVLNLNSI 122
Query: 415 LLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDKRVR 525
L+G+Q L PN +DP EA ++ + RVR
Sbjct: 123 LVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVR 159
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 62.9 bits (146), Expect = 3e-11
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = +1
Query: 172 PDGSLNLMTWECAIPGKKGTAWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNV-YPSG 348
P +++ W+ I G T +EGG + L + + YP SPP F+ + HPN+ + +G
Sbjct: 28 PVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNG 87
Query: 349 TVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNVKDPAQAEA 477
VC+ +L + W PA +++ L I LL+ + P +A
Sbjct: 88 EVCMDIL--KTHWSPAWSLQSACLAIISLLSNYDASSPLNVDA 128
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 58.4 bits (135), Expect = 6e-10
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Frame = +1
Query: 187 NLMTWECAIPGKKGTAWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLS 363
N+ + G T + GG++K+ + +YP P F +FHPN+ SG+VCL
Sbjct: 28 NMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLD 87
Query: 364 LLDEEKDWRPAITIKQIL-LGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDKRVR 525
++++ W P + I + + LL PN DP EA + + Y +VR
Sbjct: 88 VINQ--TWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVR 140
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 52.4 bits (120), Expect = 4e-08
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +1
Query: 187 NLMTWECAIPGKKGTAWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 366
N++ W I G T +EGG Y +IF DYP PP + P + +CLS
Sbjct: 33 NILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITP--SGRFQTNTRLCLSF 90
Query: 367 LD-EEKDWRPAITIKQILLGIQDLLNEPNV 453
D K W P+ + IL+G+ + +
Sbjct: 91 SDFHPKSWNPSWMVSTILVGLVSFMTSDEI 120
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 38.7 bits (86), Expect = 5e-04
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Frame = +1
Query: 100 RLAEERKAWRKDHPFGFVARPMKNPDGSLNLMTWECAIPGKKGTAWEGGLYKLRMIFKDD 279
+L EE + K + + N D + L W I G + E +Y L++ +
Sbjct: 9 KLLEELEKGEKGLGESSCSYGLTNAD-DITLSDWNATILGPAHSVHENRIYSLKIHCDAN 67
Query: 280 YPSSPPKCKFEPPLFHPNV-YPSGTVCLSLLDEEKDWRPAITIKQILLGI-QDLLNEPNV 453
YP +PP F + P V +G V +D + W+ +++ +LL + +++ + N
Sbjct: 68 YPDAPPIVTFVSRINLPGVDGETGKVNPHKIDCLRHWKREYSMETVLLDLKKEMASSSNR 127
Query: 454 KDPAQAEAYTIY 489
K P E T +
Sbjct: 128 KLPQPPEGSTFF 139
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 27.5 bits (58), Expect = 1.3
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Frame = +2
Query: 302 ASLNLLFSTPMCTHQEQCVCLS*MKRRI---GVLQ*-QSSRYSLVYKICSMNQ--M*KIL 463
AS+ L ST + T+ + CL+ +RR G+ + SS YS+ YKI SMN+ ++L
Sbjct: 925 ASIMALNSTIVTTNLKLETCLNEWERRFVFQGLSELVDSSLYSIFYKIESMNRGSCLQML 984
Query: 464 LKLKLTQSIVKTV 502
+ I+KTV
Sbjct: 985 KNMSAMIQILKTV 997
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 139 PFGFVARPMKNPDGSLNLMTWECAIPGKKGTAWEGGLYK 255
P V+R + L+ TW C++ G+ G +G L+K
Sbjct: 123 PSKVVSRKHAVVEYDLDDQTWNCSVYGRNGIKVDGKLFK 161
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 81 VGHSECTFSRREKSLAEGPSLWFRCETNEKS 173
+ H CT + +E PS RCE ++S
Sbjct: 444 LAHKNCTLKEWNQLYSEIPSRLIRCEVEDRS 474
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Frame = -3
Query: 532 PEHGLSYHTL----DGFDNRLCKLQLEQDLL 452
PE+ + YH + D FD ++ KL E+D+L
Sbjct: 367 PENVVDYHGIASFFDNFDKKINKLPREEDIL 397
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.0 bits (52), Expect = 7.1
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = -3
Query: 430 LVYQGVSA*LLLQDANPSLHLGETDTLFLMGTHWGGKEEVQTCTLGDLKDNHL*RSFLIY 251
L+ G+ +Q++N + ++ T + E V T ++D H SF +Y
Sbjct: 587 LISNGIQVLTFVQNSNEFVITSPNTYYTVLDTGFSLSESVPFATKEWIQDMHAENSFNMY 646
Query: 250 K-VHLPKQSLFFQVSHI---PRSLDLAIHLDFSLVS 155
K +H+ S F + HI +LD +H + L++
Sbjct: 647 KNLHI---SAPFSLDHILLANATLDKTVHSAYWLMT 679
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 325 HPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNE 444
H N++P L +D D +P T+ Q L IQ + E
Sbjct: 161 HTNIHPEAPTVLPPIDGFTDSQPISTLPQDLSQIQLRIQE 200
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 24.6 bits (51), Expect = 9.4
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 247 LYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGI 426
L KL IF ++ + KF HPN T ++ + + KQIL +
Sbjct: 464 LRKLTEIFGLEWATETIIPKFLAMRSHPNYLYRMTTIFAISEIAPALNAEVIEKQILPTL 523
Query: 427 QDLLNEP 447
+ L+N+P
Sbjct: 524 EQLVNDP 530
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,912
Number of Sequences: 5004
Number of extensions: 52117
Number of successful extensions: 143
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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