Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H04
         (357 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4ZH86 Cluster: NADH dehydrogenase subunit 2; n=6; Oomy...    34   0.63 
UniRef50_A2DJ38 Cluster: Putative uncharacterized protein; n=1; ...    34   0.83 
UniRef50_UPI0000498F81 Cluster: hypothetical protein 22.t00002; ...    33   1.9  
UniRef50_Q2NG83 Cluster: Member of asn/thr-rich large protein fa...    31   4.4  
UniRef50_A5G3U3 Cluster: Sensor protein; n=1; Geobacter uraniumr...    31   5.9  
UniRef50_A0D850 Cluster: Chromosome undetermined scaffold_40, wh...    31   7.7  
UniRef50_Q8BHB3 Cluster: Lymphocyte transmembrane adapter 1; n=3...    31   7.7  

>UniRef50_A4ZH86 Cluster: NADH dehydrogenase subunit 2; n=6;
           Oomycetes|Rep: NADH dehydrogenase subunit 2 -
           Phytophthora sojae
          Length = 497

 Score = 34.3 bits (75), Expect = 0.63
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +1

Query: 7   IALNI*RKGFKAVCDLARLYNIN*REISLKASRCVLNIRRNINAPPF--LKEKLRHFCSR 180
           ++LNI  K  K + DL+ +Y+IN     L A   +LNI      PP      KL  F S 
Sbjct: 360 LSLNINHKPIKYLTDLSNIYSIN----KLIAVIIILNIFSLAGIPPLAGFFSKLFIFFSA 415

Query: 181 KKNLYHKK*YFGLFFRDIILHSYLY 255
            KN Y    +FG+     +L S+ Y
Sbjct: 416 IKNNYFSLVFFGIIIS--VLSSFYY 438


>UniRef50_A2DJ38 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 456

 Score = 33.9 bits (74), Expect = 0.83
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 143 PFLKKNYVTFVPGKKTFIIRNNISGFSFEILYFI 244
           PF K+N V F+ G   F +R  +S F F IL FI
Sbjct: 126 PFFKRNTVGFIDGGLLFNLRERLSVFPFRILDFI 159


>UniRef50_UPI0000498F81 Cluster: hypothetical protein 22.t00002;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 22.t00002 - Entamoeba histolytica HM-1:IMSS
          Length = 210

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 110 CLISGEILTPPPFLKKNYVTFVPGKKTFIIRNNISGFSFEILYFI 244
           CL+ G IL     +  +Y  FV G   +I   +ISGFS  + Y I
Sbjct: 17  CLVCGGILIGLSVMSYHYTEFVEGSLIWIQITSISGFSCGVTYLI 61


>UniRef50_Q2NG83 Cluster: Member of asn/thr-rich large protein
           family; n=1; Methanosphaera stadtmanae DSM 3091|Rep:
           Member of asn/thr-rich large protein family -
           Methanosphaera stadtmanae (strain DSM 3091)
          Length = 1875

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 101 HAVCLISGEILTPPPFLKKNYVTFVPGKKTFIIRNNISGFSFEILYFIRTY 253
           HAVC++  +      + K N++T  PG   FII+N+    S E  Y+  +Y
Sbjct: 705 HAVCIVGWD----DNYNKNNFITPAPGNGAFIIKNSWGTSSGENGYYYVSY 751


>UniRef50_A5G3U3 Cluster: Sensor protein; n=1; Geobacter
           uraniumreducens Rf4|Rep: Sensor protein - Geobacter
           uraniumreducens Rf4
          Length = 891

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 85  ISLKASRCVLNIRRNINAPPFLKEKLRHFCSRKKNLYH 198
           I + A +C+LN+  +I A    +E+LRH   R + LY+
Sbjct: 496 IEIGAEQCLLNVLNDITARKKAEEELRHSEERYRRLYN 533


>UniRef50_A0D850 Cluster: Chromosome undetermined scaffold_40, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_40,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 507

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 134 LIFRLILSTQREAFRLISRQLILYSLAKSQTALKPFRYIF 15
           +IF  I+ST+ E F LIS+ + LY L+K     +    +F
Sbjct: 328 MIFSTIISTKDEKFILISKFITLYQLSKEAKHYQMLHVVF 367


>UniRef50_Q8BHB3 Cluster: Lymphocyte transmembrane adapter 1; n=3;
           Murinae|Rep: Lymphocyte transmembrane adapter 1 - Mus
           musculus (Mouse)
          Length = 407

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 131 LTPPPFLKKNYVTFVPGKKTFIIRNNISGFSFEIL 235
           L PP    KN   F+P ++T + R+ +SGFS E L
Sbjct: 77  LPPPRHRAKNIYDFLPRQQTELGRHQLSGFSTESL 111


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 279,386,793
Number of Sequences: 1657284
Number of extensions: 4743367
Number of successful extensions: 9203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9200
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11941480628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)