Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H04
         (357 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)                  27   3.4  
SB_33359| Best HMM Match : DGPF (HMM E-Value=2.7)                      27   5.9  
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  
SB_56214| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  

>SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)
          Length = 691

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 125 EILTPPPFLKKNYVTFVPGKKTFIIRNN 208
           E+L   PF++KN V   P K+  I+ +N
Sbjct: 192 EVLAGTPFMEKNDVAMRPAKRQVIVGDN 219


>SB_33359| Best HMM Match : DGPF (HMM E-Value=2.7)
          Length = 305

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 101 HAVCLISGEILTPPPFLKKNYVTFVPGKKTFIIRNN 208
           H V  +  E+L   PF++KN V   P K+  I+ +N
Sbjct: 234 HVVEDLDVEVLAGTPFMEKNDVEVRPVKRQVIVGDN 269


>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 136 APPFLKEKLRHFCSRKKN 189
           +PP LKEK  H CS   N
Sbjct: 523 SPPSLKEKKEHICSENTN 540


>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 109  VLNIRRNINAPPFLKEKLR 165
            V+NI + IN PP  K+KL+
Sbjct: 1174 VVNITKTINKPPSFKDKLK 1192


>SB_56214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 140 PPFLKKNYVTFVPGKKTFIIRNNISGFSFEIL 235
           P FL K   T      TFII  +++GFS E+L
Sbjct: 487 PQFLAKTLPTQSTFFITFIILKSLTGFSLELL 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,419,145
Number of Sequences: 59808
Number of extensions: 137971
Number of successful extensions: 241
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)