Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H04
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z36753-10|CAA85341.1|  708|Caenorhabditis elegans Hypothetical p...    27   5.1  
U00031-2|AAT92090.1|  377|Caenorhabditis elegans Hypothetical pr...    26   6.7  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 134  TPPPFLKKNYVTFVPGKKTFIIRNNI 211
            TPPP LKK Y T    +K F  R  +
Sbjct: 2116 TPPPTLKKLYTTMKDVEKAFYHRKRV 2141


>Z36753-10|CAA85341.1|  708|Caenorhabditis elegans Hypothetical
           protein T09A5.12 protein.
          Length = 708

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 119 SGEILTPPPFLKKNYVTFVPGKKTFIIRNN 208
           SG    PP ++KK    +  GK  +I RNN
Sbjct: 78  SGVTFPPPDYMKKMKENYESGKIIYIRRNN 107


>U00031-2|AAT92090.1|  377|Caenorhabditis elegans Hypothetical
           protein B0361.5b protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +1

Query: 91  LKASRCVLNIRRNINAPPFLKEKLRHFCSRKKNLYHKK 204
           L+++R +  + + + +PP +   +R   ++ KN+Y  K
Sbjct: 8   LRSARMLPAVSKKVVSPPMMLRSVRELTNQSKNVYATK 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,554,688
Number of Sequences: 27780
Number of extensions: 116197
Number of successful extensions: 239
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)