Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H04
         (357 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76280.1 68414.m08858 pentatricopeptide (PPR) repeat-containi...    30   0.52 
At4g39420.1 68417.m05579 expressed protein  ; expression support...    26   8.5  
At4g03570.1 68417.m00492 hypothetical protein                          26   8.5  

>At1g76280.1 68414.m08858 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 773

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 112 LNIRRNINAPPFLKEKLRHFCSRKKNLYHKK*YFGLFFRDIILHSYLYA 258
           LN+ R + A   + E +RH    +    H   Y G    +I+LHS L A
Sbjct: 490 LNVLRALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHSLLEA 538


>At4g39420.1 68417.m05579 expressed protein  ; expression supported
           by MPSS
          Length = 781

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 128 FRLILSTQREAFRLISRQLILYSLAKSQTALKP 30
           F+L LS  REAF   SRQL+L     S+  L P
Sbjct: 22  FQLKLSEFREAFISPSRQLLLLLSYHSEALLLP 54


>At4g03570.1 68417.m00492 hypothetical protein 
          Length = 347

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 142 PFLKEKLRHFCSRKKNLYHKK*YFG 216
           PF +E ++H+C  K+ +   K ++G
Sbjct: 31  PFSEEAVQHYCLFKRQMIESKGFYG 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,032,710
Number of Sequences: 28952
Number of extensions: 104127
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)