Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H03
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    29   0.62 
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.82 
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    27   2.5  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   5.8  
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    25   5.8  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   7.7  

>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 303 LFGFWVHCT*LLGQQLRGPHYYSVYTLLEELYILSCTRSYLCRNRRVVSLSVFH 464
           + G W   T  + + +   HY   Y  L+ +YI S   S  C    V SL + H
Sbjct: 234 ILGVWSSFTTAI-ESVAVKHYVHEYPTLDLIYIFSALMSVFCLLLSVASLELLH 286


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 400 FYRVRDRTSAATGAWYRFRYSIAHQIIHGNPSDTILRYCSI 522
           F+R + +TS+ T +      S++H     NP+ T+L + ++
Sbjct: 116 FFRRKPKTSSTTNSLSSSSSSVSHMNQDANPNSTVLTFTAV 156


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 303 LFGFWVHCT*LLGQQLRGPHYYSVYTLLEELYILSCTRSYL 425
           L G W     LL Q+  G HY+S+    E +Y L    ++L
Sbjct: 218 LCGCWSEEMQLLIQRTYGDHYFSLVLASETIYSLPSLENFL 258


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 366 YSVYTLLEELYILSCTRSYLC 428
           + V+TLL E Y  +C+R+ LC
Sbjct: 368 HGVFTLLTECYSSTCSRNRLC 388


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 240 LTINALRGAGVHISTI*KTYPLFGFWVHCT*LLGQQLRGPHYY--SVYT 380
           +T+N L G+  HI    ++   FG++ +   +L + + G  YY  +VYT
Sbjct: 117 MTLNGLFGSHYHIPFAVQSRASFGYYFNTLIILLRFIAGLFYYGTNVYT 165


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 376 IHCWKNCTFYRVRDRTSAATGAWYRFRYSIAHQIIHGN 489
           +H  KN +F  +     AA  AW     S  HQ+  GN
Sbjct: 130 VHAPKNLSFEEIATLPCAAVTAWNGLFGSKEHQVKPGN 167


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 242 DDQRVERCRRAHLNDLENIPAFWILGALYVTT---GPAVAWATLLFRLY 379
           D + VE+C     +D +N   +WI  + Y++T    P +A  TL   LY
Sbjct: 443 DFESVEKCWSDMFHDFQNQALYWI--SRYISTMKYNPELAAETLKKSLY 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,613
Number of Sequences: 5004
Number of extensions: 45358
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)