Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H03
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100...    31   0.84 
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549...    29   1.9  
01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584...    29   2.6  
02_05_0960 + 33097510-33097821,33098846-33099043,33099174-330994...    29   3.4  
12_02_0170 - 14871985-14872110,14872239-14872454,14872541-148725...    28   4.5  
04_04_1022 + 30195703-30195753,30195925-30195987,30197535-301978...    28   4.5  
05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583     28   5.9  
02_01_0072 - 502785-504038                                             27   7.8  

>06_03_1306 +
           29208882-29209547,29209641-29209854,29209947-29210023,
           29210132-29210171,29210254-29210323,29210419-29210488,
           29210747-29210995,29212810-29214700,29215458-29215771
          Length = 1196

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 271 CTSQRFRKHTRFLDSGC-IVRDYWASSCVGHIIIPFIHCWKNCTFYRVRD 417
           C ++  +KH     +GC ++ D W S C    I   +HC K   F +  D
Sbjct: 736 CHARDLKKHWEM--NGCSVILDTWESRCGKSFISVLVHCSKGMLFIKSMD 783


>03_02_0859 - 11853928-11854138,11854225-11854683,11854760-11854991,
            11855064-11855187,11855276-11855960,11856429-11856735,
            11856832-11858188
          Length = 1124

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 278  LNDLENIPAFWILGALYVTTGPAVAWATLLFRLYTVGRIVHSIVYAI 418
            ++ +  +P FW   A+Y   G  + WA LL  +  VG I H +  AI
Sbjct: 1045 IDSIPILPGFW---AIYKVMGTGLFWA-LLLAVIVVGMIPHFVAKAI 1087


>01_05_0176 -
           18957676-18958067,18958139-18958242,18958358-18958483,
           18959495-18959628,18959757-18959894,18960835-18960964,
           18961316-18961357,18964741-18965024
          Length = 449

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +2

Query: 314 LGALYVTTGPAVAWATLLFRLYTVGRIVHSIVYAIVPLPQPARGIAFGIPLLIKLYM 484
           LG      G    W +L   L T+G  + ++ + + P P+ AR + +G  L +  +M
Sbjct: 313 LGFFAYNWGLTSEWFSLEASLLTLGLTIGALSFVLEPTPKTARRMFYGSLLYLPAFM 369


>02_05_0960 +
           33097510-33097821,33098846-33099043,33099174-33099446,
           33099575-33099677,33100297-33100415,33100968-33101759
          Length = 598

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 403 YRVRDRTSAATGAWYRFRYSIAHQIIHGNPSDTILRYCSIRMI 531
           + +RD  +AATGA   F ++I  +   G  SD +L Y    M+
Sbjct: 195 HSIRDTLTAATGAVVPFHHTIVQE---GGVSDLVLGYAHFGMV 234


>12_02_0170 -
           14871985-14872110,14872239-14872454,14872541-14872588,
           14872960-14873061,14873144-14873254,14873388-14873483,
           14873579-14873697,14874014-14874095,14874149-14874218,
           14874320-14874382,14874487-14874602,14874731-14874817
          Length = 411

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 254 VERCRRAHLNDLENIPAFWILGALYVTTGPAVAW 355
           +ER  + +LND++ +P + +   L V  G  V W
Sbjct: 77  IERPAKLYLNDIKKLPKYNVTATLQVDFGVLVDW 110


>04_04_1022 +
           30195703-30195753,30195925-30195987,30197535-30197843,
           30197934-30199292
          Length = 593

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 504 YSITWVPMYNLMS--NGIPKAIPRAGCGRGTIAYTIECTIL 388
           YS   VPM N +S  NG P  + R G GR  +A+ +    L
Sbjct: 423 YSSVIVPMLNSLSLANGEPSQLQRMGAGRLLMAFAMAVAAL 463


>05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583
          Length = 602

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 441 RAGCGRGTIAYTIECTILPTVYKRNNNVAHATAG 340
           RA C     A  +   ++P +Y+R   ++H  +G
Sbjct: 13  RAYCSEAATAIAVAVAVVPCIYRRATEISHKYSG 46


>02_01_0072 - 502785-504038
          Length = 417

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 338 GPAVAWATLLFRLYTVGRIVHSIVYAIVPLPQPARGIA--FGIPLLIKLYMGTQVILYYA 511
           GPA A +  + R ++ GR VH++   + P PQ     +   G  L + LY  + V+++  
Sbjct: 180 GPARALSFSVSRNWSSGRHVHAMAAHLAPPPQSPTSASPGAGCGLGLALYTMSSVLVFSM 239

Query: 512 TAL 520
            AL
Sbjct: 240 WAL 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,899,317
Number of Sequences: 37544
Number of extensions: 287551
Number of successful extensions: 720
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)