Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H03
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    29   2.3  
Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U55856-7|AAA98025.1|  249|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 458 YRKRYHAPVAAEVRSRTR*NVQFF-QQCINGIIMW 357
           YR++ H     E R R R  ++FF Q C+ GI+ +
Sbjct: 201 YRRKSHLTSNDETRRRRRVEIRFFTQSCLQGILFF 235


>Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical
           protein C27A7.7 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +2

Query: 308 WILGALYVTTGPAVAWATLLFRLYTVGRIVHSIVYAIVPLPQPARGIAFGIPLLIKLYMG 487
           WIL  +    G  + W   ++ L        S  Y ++P  +        IPLL   Y G
Sbjct: 132 WILIMISAVFGQGLLWFFSVYFLMWPDSETRS--YLVIPFRRDYNADVHKIPLLASTYWG 189

Query: 488 --TQVILYYATAL 520
             TQ+IL  +TA+
Sbjct: 190 ASTQLILRTSTAI 202


>U55856-7|AAA98025.1|  249|Caenorhabditis elegans Hypothetical
           protein F31E8.1 protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 381 LLEELYILSCTRSYLCRNRRVVSLSVFHCSSN 476
           ++ EL+ LS +RSY+C N  V S ++   SSN
Sbjct: 1   MVGELFALSISRSYVCLN--VSSFNIHSISSN 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,279,280
Number of Sequences: 27780
Number of extensions: 258568
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)