Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H03
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04770.1 68418.m00492 amino acid permease family protein simi...    31   0.40 
At2g13650.1 68415.m01504 GDP-mannose transporter (GONST1) identi...    31   0.40 
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    31   0.53 
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    28   5.0  
At1g34355.1 68414.m04265 forkhead-associated domain-containing p...    27   6.5  
At1g14250.1 68414.m01687 nucleoside phosphatase family protein /...    27   6.5  
At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)...    27   8.7  
At2g44840.1 68415.m05583 ethylene-responsive element-binding pro...    27   8.7  

>At5g04770.1 68418.m00492 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 583

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 326 YVTTGPAVAWATLLF-RLYTVGRIVHSIVYAIVPLPQP 436
           YV  GP   W TL F  L+++  +V ++++ +VP  +P
Sbjct: 441 YVPVGPTKPWPTLCFLTLFSITSLVFTLIWKLVPEGKP 478


>At2g13650.1 68415.m01504 GDP-mannose transporter (GONST1) identical
           to GDP-mannose transporter SP:Q941R4 from [Arabidopsis
           thaliana]
          Length = 333

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 287 LENIPAFWILGALYVTTGPAVAWATLLFRLYTVGRIVHSIVYAIVPLPQPARGIA-FGIP 463
           L  +P+FW++  L    G A+++ ++ F L+  G   +S+V ++  +P    GI  F +P
Sbjct: 247 LLRLPSFWMVMTLSGLLGLAISFTSMWF-LHQTGATTYSLVGSLNKIPLSIAGIVLFNVP 305


>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 188  GVYANPEDAAIAKGKVKFDDQRVERCRRAHLNDLENIP-AFW 310
            G  AN E AA  + K KF  + + +C+ + ++ L NIP A W
Sbjct: 973  GADANEEIAAQREEKKKFSLEHIAKCQHSSISGLSNIPIANW 1014


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
           nearly identical to retinoblastoma-related protein
           [Arabidopsis thaliana] GI:8777927; contains Pfam
           profiles: PF01858 retinoblastoma-associated protein A
           domain, PF01857 retinoblastoma-associated protein B
           domain
          Length = 1013

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 137 QRVSPSIRCKTVSKDYLDPFSVNYFRSLL 51
           ++ SP+  C+T   D +DP  + YF  LL
Sbjct: 287 KKPSPASECQTDKLDNIDPDGLTYFEDLL 315


>At1g34355.1 68414.m04265 forkhead-associated domain-containing
            protein / FHA domain-containing protein
          Length = 1477

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 342  QQLRGPHYYSVYTLLEELYILSCTRSYLCRNRRVVSLS----VFHCSSNYTW 485
            Q L+G H     T+L EL  +  +RS+L R R  ++ S    +  C  N  W
Sbjct: 1259 QGLKGTHLVVPRTVLRELNEVKRSRSFLFRRRTEIASSALDWIEECKVNSKW 1310


>At1g14250.1 68414.m01687 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|P97687
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Rattus norvegicus}; contains
           Pfam profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 488

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 233 VKFDDQRVERCRRAHLNDLENIPAFWILGALYVTT 337
           V  DD+R++   +A     ENIP  W LGA  + T
Sbjct: 439 VALDDERIKYASKA---GKENIPLDWALGAFILNT 470


>At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)
           identical to heat shock protein 70 [Arabidopsis
           thaliana] GI:6746592
          Length = 718

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 468 SNGIPKAIPRAGCGRGTIAYTIECTILPTVYKRNNNVAHATAGPVVTYN 322
           +N IP+++     G  T  +T   +    + +RNNN +  T GPV   N
Sbjct: 32  TNSIPRSV---FFGNRTSPFTTPTSAFLRMGRRNNNASRYTVGPVRVVN 77


>At2g44840.1 68415.m05583 ethylene-responsive element-binding
           protein, putative
          Length = 226

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 173 ARITRGVYANPEDAAIAKGKVKF 241
           AR+  G Y  PEDAA+A  +  F
Sbjct: 115 ARVWLGTYETPEDAAVAYDRAAF 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,322,594
Number of Sequences: 28952
Number of extensions: 229950
Number of successful extensions: 562
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)