Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H02
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual        111   1e-25
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   2.7  
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    26   4.8  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    25   6.3  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    25   6.3  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   6.3  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   6.3  

>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score =  111 bits (266), Expect = 1e-25
 Identities = 59/146 (40%), Positives = 85/146 (58%)
 Frame = +3

Query: 147 EEMHVHQVYEQIAGHFSTTRHKPWPKVVEFMRQVSTGAVVIDLGCGNGKNILKRDDILQL 326
           E  +VHQVY++IA HFS TR+KPWP V +F++ +  G+V +D+GCGNGK      ++  +
Sbjct: 6   ENEYVHQVYDKIATHFSDTRYKPWPVVEKFLKSLPLGSVGVDIGCGNGKYQKVNPNVYMI 65

Query: 327 AGERSSGLLEECRQHVLGVSGAQCLQLDLLHAGIRDSCADFIICIAVIHHFSTKARRLQA 506
             +R   L++     +    G   +  D LH     +  DF + IAVIHHFS + RRLQA
Sbjct: 66  GSDRCVKLVK-----IASNLGPMVIS-DGLHVPHPSNRFDFALSIAVIHHFSNENRRLQA 119

Query: 507 VLTIKRLLSRNAQALITVWAKDQSKS 584
           V  + R L +  +AL  VWA +Q  S
Sbjct: 120 VQEVLRPLVKGGKALFFVWALEQKNS 145


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 18  ETRISLTFRWTRSGPCLCTYK 80
           +TR+    RW  S PCL  Y+
Sbjct: 391 QTRLQKFLRWLNSNPCLIPYR 411


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = +3

Query: 240 RQVSTGAVVIDLGCGNG--KNILKRDDILQLAGERSSGLLEECRQHVLGVSGAQCLQLDL 413
           R   +G  ++D+GCG G     + R      A + S   +E  ++H   +      +L+ 
Sbjct: 73  RNCFSGKKILDIGCGGGILSESMARLGASVTAVDASPMAIEVAKKHA-SLDPVLNGRLEY 131

Query: 414 LHAGIRDS----CADFIICIAVIHH 476
           +H  +  S      D + C+ V+ H
Sbjct: 132 IHGSVEGSQLPTTFDVVTCMEVLEH 156


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 KPWPKVVEFMRQVSTGAVVIDLG 278
           +P P+V EF+RQ     V  DLG
Sbjct: 14  QPPPRVAEFIRQAQNEEVTSDLG 36


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 261 VVIDLGCGNGKNILKRD 311
           +V+D+GCG G +++K D
Sbjct: 142 LVLDMGCGKGGDLIKWD 158


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 213 PWPKVVEFMRQVSTG 257
           PWPKVVE++   S G
Sbjct: 350 PWPKVVEYLGTCSIG 364


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = -3

Query: 296 ILSITAA*INNYSPGGHLPHELHDFGPRFVPRRAKVTRDLFIHLM 162
           IL++    + +Y P   L H+L+ +    +P   +  +D+ + L+
Sbjct: 217 ILNLDVQDLKHYPPTKKLYHQLYSYPQEIIPIMDQTIKDVMLDLL 261


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = +3

Query: 210 KPWPKVVEFMRQVSTG-----AVVIDLGCGNGKNI 299
           +P P + E M  V  G     A V+D+GCG+G+++
Sbjct: 124 EPCPYLKEVMPVVEKGIKTNNARVLDIGCGSGRDL 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,250
Number of Sequences: 5004
Number of extensions: 44664
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)