Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_H02
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0761 - 31550936-31551020,31551641-31552666,31553083-315531... 112 2e-25
01_03_0254 - 14276308-14276313,14277101-14277277,14278290-14278688 35 0.057
08_01_0637 + 5537421-5539547 33 0.17
04_04_1056 - 30447791-30447850,30448020-30448085,30448299-304485... 32 0.30
08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626 29 2.1
08_01_0538 - 4670159-4670251,4670332-4670393,4670476-4670599,467... 29 2.1
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 29 3.7
02_05_0063 - 25523140-25524405 29 3.7
03_01_0451 + 3461229-3461561,3462043-3462290,3462425-3462716,346... 28 4.9
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 28 6.5
08_02_0662 + 19789406-19789546,19789646-19789779,19790272-197904... 27 8.6
12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730 23 9.0
>02_05_0761 -
31550936-31551020,31551641-31552666,31553083-31553117,
31554921-31555039,31555215-31555331,31556131-31556205,
31556885-31557017
Length = 529
Score = 112 bits (270), Expect = 2e-25
Identities = 58/150 (38%), Positives = 87/150 (58%)
Frame = +3
Query: 144 LEEMHVHQVYEQIAGHFSTTRHKPWPKVVEFMRQVSTGAVVIDLGCGNGKNILKRDDILQ 323
+E+ +VH+VY+ IA HFS+TR WPKV F+ + G+V++D GCGNGK + D L
Sbjct: 227 IEKKYVHRVYDAIAPHFSSTRFAKWPKVAGFLNSLRPGSVILDAGCGNGKYLGFNPDCLF 286
Query: 324 LAGERSSGLLEECRQHVLGVSGAQCLQLDLLHAGIRDSCADFIICIAVIHHFSTKARRLQ 503
+ + S L++ C G + L D ++ RD+ D I IAV+HH ST ARR +
Sbjct: 287 IGCDISPPLIDICAGR-----GHEVLVADAVNLPYRDNFGDAAISIAVLHHLSTDARRRK 341
Query: 504 AVLTIKRLLSRNAQALITVWAKDQSKSNYL 593
A+ + R++ + LITVWA +Q + L
Sbjct: 342 AIEELIRVVRKGGLVLITVWAVEQEDKSLL 371
>01_03_0254 - 14276308-14276313,14277101-14277277,14278290-14278688
Length = 193
Score = 34.7 bits (76), Expect = 0.057
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +1
Query: 178 KSRVTLARRGTNRGPKSWSSCGKCPPGL*LLI*AAVMERIYSKGTI 315
KSR+ L R RGP W CG P L LI AA +++ Y K T+
Sbjct: 119 KSRLGLTERLYLRGPVLWPECGWRPVSLTDLITAASVKKEYRKATL 164
>08_01_0637 + 5537421-5539547
Length = 708
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = +3
Query: 261 VVIDLGCGNGKNILKRDDILQLAGERSSGLLEECRQHVLGVSGAQCLQLDLLHAGIRDSC 440
+V+D GC G ++ +D++ + + GL+ + VL +G QC HA +
Sbjct: 628 LVLDTGCELGAKLISQDELQEAGADGKLGLIAQVWVEVLCHAGQQCSAYS--HARQLSNG 685
Query: 441 ADFIICIAVIHHFSTK 488
+ I A++ + TK
Sbjct: 686 GELITVAALLVEYVTK 701
>04_04_1056 -
30447791-30447850,30448020-30448085,30448299-30448583,
30448744-30448869,30449068-30449154,30449273-30449695
Length = 348
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 9 VSRETR-ISLTFRWTRSGPCLCTYKTLCDS 95
+ R TR +S TFR R G C C Y CDS
Sbjct: 316 IKRNTRRVSFTFRKVRMGLCDCEYGQFCDS 345
>08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626
Length = 369
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 408 DLLHAGIRDSCADFIICI----AVIHHFSTKARRLQAVLTIKRLLSRNAQALITVWA 566
DL + D+ D ++C+ A++H FST + + AVL +++ + A + W+
Sbjct: 108 DLREDDLHDAKEDHVVCLLQPAALVHRFSTGLQLMVAVLHDPTVITHKSGAAVFGWS 164
>08_01_0538 -
4670159-4670251,4670332-4670393,4670476-4670599,
4670797-4670859,4671483-4671533,4671627-4671691,
4671797-4671935,4672332-4672388,4672729-4672827,
4673266-4673337,4673426-4673494,4673617-4673762,
4673881-4674157
Length = 438
Score = 29.5 bits (63), Expect = 2.1
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 19/124 (15%)
Frame = +3
Query: 216 WPKVVEFMRQVSTGAVVIDLGCGNGKNILKRDDI---LQLAGERSSGLLEECRQHVLGVS 386
W K V G V+DL CG G +++K D + + + G +++C G +
Sbjct: 141 WIKSVLIQLYAHPGDCVLDLACGKGGDLIKWDKAKVGYYVGVDIAEGSIKDCMTRYNGDT 200
Query: 387 G---------------AQCLQLDLLHAGIRDSCADFIICIAVIHH-FSTKARRLQAVLTI 518
A C + L D+ D C +H+ +ST+AR QA+ +
Sbjct: 201 DQQRRKKFSFPARLICADCYEARLDEHLYEDAPFDICSCQFALHYSWSTEARARQALANV 260
Query: 519 KRLL 530
LL
Sbjct: 261 SALL 264
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +3
Query: 51 RSGPCLCTYKTLCDSVERTSTDDIDDEVATKLEEMHVHQVYEQIAGHFSTTRHKPWPKVV 230
RSGPC+CT + E +S+ D D+ V + ++ +A F H P
Sbjct: 166 RSGPCICTDCSFSPLHESSSSSDDDNAVPSP-----TFSLFLALAEQFVPFTHPKTPTAT 220
Query: 231 EFMRQVSTGAVVIDL 275
+ Q G DL
Sbjct: 221 DVALQAGEGKRFEDL 235
>02_05_0063 - 25523140-25524405
Length = 421
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Frame = +3
Query: 96 VERTSTDD--IDDEVATKLEEMH------VHQVYEQIAGHFSTTRHKPWPKVVEFMRQVS 251
+ER +D + D V KL ++H HQVY Q+ F R EF+ +
Sbjct: 114 LERVKAEDEKLYDRVVVKLSDLHKKRWMDAHQVYAQLEKVFGPARRDLLRCSAEFLPKGP 173
Query: 252 TGAVVIDLGCGNGKNILKR 308
D G G G + KR
Sbjct: 174 PPEFAEDPGAGPGPSSWKR 192
>03_01_0451 +
3461229-3461561,3462043-3462290,3462425-3462716,
3463057-3463209,3463288-3463674
Length = 470
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +3
Query: 276 GCGNGKNILKRDDILQLAGERSSGLLEECRQHVLGVSGAQCLQLDLLHAGIRDSCADFII 455
GCG G+N+ D +LQL E + + ++ S + C ++ +L +S +D ++
Sbjct: 386 GCGAGRNVAHLDKVLQLLRESNINEDDTPWSELIEAS-SFCSEVSVLSKTAVNSFSDRLV 444
Query: 456 CIAVIHHFSTKARRLQAV 509
+ + S L+AV
Sbjct: 445 HVPTCNVVSNLLSMLEAV 462
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 260 SPGGHLPHELHDFGPRFVPRRAKVTRDLFIH 168
SP L H H PRF P R+ R L +H
Sbjct: 3 SPSLLLHHHHHRLSPRFAPSRSPSPRTLSLH 33
>08_02_0662 +
19789406-19789546,19789646-19789779,19790272-19790476,
19791233-19791367,19792117-19792746,19793180-19793356,
19795175-19795198
Length = 481
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 48 TRSGPCLCTYKTLCDSVERTSTDDIDDEVATKLEE 152
+R P CT KT S++ + DD D+ LEE
Sbjct: 337 SRQEPAFCTEKTNQGSIDIAADDDKGDDEKATLEE 371
>12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730
Length = 1072
Score = 23.0 bits (47), Expect(2) = 9.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 279 CGNGKNILKRDDILQLAGERSSGLLEECRQH 371
C K +KR+ ++ GE+ S LL+E R H
Sbjct: 655 CTLQKLDVKREVVITGNGEQGSPLLKEVRVH 685
Score = 22.6 bits (46), Expect(2) = 9.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 72 TYKTLCDSVERTSTDDIDDEVATKLEEMH 158
T K++ V S D+ D+E+++K +EM+
Sbjct: 613 TRKSIPKDVMVISDDEFDEELSSKDDEMN 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,974,973
Number of Sequences: 37544
Number of extensions: 324162
Number of successful extensions: 827
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -