Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H02
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)                     98   4e-21
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                46   2e-05
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)                     27   8.7  
SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)                   27   8.7  

>SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)
          Length = 529

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 51/149 (34%), Positives = 78/149 (52%)
 Frame = +3

Query: 144 LEEMHVHQVYEQIAGHFSTTRHKPWPKVVEFMRQVSTGAVVIDLGCGNGKNILKRDDILQ 323
           LE+  VH+ YE+IA  F   R+K WP V +F++    G+V+ D+GCG GK +    D   
Sbjct: 13  LEKRFVHETYEEIAPGFRNARYKAWPCVTQFIKAQPKGSVIADIGCGTGKYLSISTDAFI 72

Query: 324 LAGERSSGLLEECRQHVLGVSGAQCLQLDLLHAGIRDSCADFIICIAVIHHFSTKARRLQ 503
              +     +E  R+    VS   C  L L +   RD C D +I + VIHH ++  RRLQ
Sbjct: 73  TGSDCCPKFVEIARERQHEVS--LCDNLSLPY---RDDCLDAVISVGVIHHLASSKRRLQ 127

Query: 504 AVLTIKRLLSRNAQALITVWAKDQSKSNY 590
           A+  + R+L    + ++ VWA +Q    +
Sbjct: 128 AICELARVLRPGGKMMLCVWAMEQKHRKF 156


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/49 (40%), Positives = 31/49 (63%)
 Frame = +3

Query: 429 RDSCADFIICIAVIHHFSTKARRLQAVLTIKRLLSRNAQALITVWAKDQ 575
           +++  D  +CIAVIHH ST  RR+ A+  + R++     AL+ VWA +Q
Sbjct: 363 KNNAFDVCLCIAVIHHLSTTERRIAALRELVRIIRPAGLALVYVWALEQ 411



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 15  RETRISLTFRWTRSGPCLCTYKT 83
           RE RISLTFR     PC C Y +
Sbjct: 340 RERRISLTFRKILHVPCTCKYSS 362


>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1488

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 60  PCLCTYKTLCDSVERTSTDDIDDEVATKLEEM 155
           PCL     L   V+R+ST+D+ DEVA K +E+
Sbjct: 553 PCLHLTLFLVVMVDRSSTEDM-DEVARKAKEL 583


>SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)
          Length = 380

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/65 (23%), Positives = 25/65 (38%)
 Frame = +3

Query: 96  VERTSTDDIDDEVATKLEEMHVHQVYEQIAGHFSTTRHKPWPKVVEFMRQVSTGAVVIDL 275
           V   S++   D+      EM     Y     HF   R   +   +   + +    +V+D+
Sbjct: 132 VNHNSSNGAKDKPKPGASEMTSADYYFDSYAHFDEVRTLTYRNSMYHNKHLFRDKIVLDV 191

Query: 276 GCGNG 290
           GCG G
Sbjct: 192 GCGTG 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,422,189
Number of Sequences: 59808
Number of extensions: 363746
Number of successful extensions: 877
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)