Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H02
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical pr...   140   7e-34
U21324-14|AAA62568.1|  365|Caenorhabditis elegans Hypothetical p...    83   2e-16
U70849-12|AAF99920.2|  236|Caenorhabditis elegans Hypothetical p...    28   4.4  

>Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical
           protein C14B1.10 protein.
          Length = 591

 Score =  140 bits (339), Expect = 7e-34
 Identities = 73/195 (37%), Positives = 111/195 (56%), Gaps = 1/195 (0%)
 Frame = +3

Query: 9   VSRETRISLTFRWTRSGPCLCTYKTLCDSVERTSTD-DIDDEVATKLEEMHVHQVYEQIA 185
           V R+TR+SLT R  R  PC C +K  CD   +       ++++A KLE  +V  VYE IA
Sbjct: 308 VPRQTRVSLTLRKIRRKPCECEWKEFCDWDRKGEMSVPSNEDLALKLENSYVSDVYENIA 367

Query: 186 GHFSTTRHKPWPKVVEFMRQVSTGAVVIDLGCGNGKNILKRDDILQLAGERSSGLLEECR 365
            HF  TRH  W  V +F+ ++  G+V+ D+GCGNGK ++ +D +L++  +   GL +  R
Sbjct: 368 SHFDETRHSSWKAVKQFINEIPRGSVMYDVGCGNGKYLIPKDGLLKIGCDMCMGLCDIAR 427

Query: 366 QHVLGVSGAQCLQLDLLHAGIRDSCADFIICIAVIHHFSTKARRLQAVLTIKRLLSRNAQ 545
           +    V  A+C   D L    R   AD  I IAV+HH +T  RR + +  + R++   ++
Sbjct: 428 KKDCHV--ARC---DALALPFRYESADAAISIAVLHHIATFERRKRLIEELLRVVKPGSK 482

Query: 546 ALITVWAKDQSKSNY 590
             +TVW+ DQS+S Y
Sbjct: 483 ICVTVWSMDQSQSEY 497


>U21324-14|AAA62568.1|  365|Caenorhabditis elegans Hypothetical
           protein C35D10.12 protein.
          Length = 365

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 5/154 (3%)
 Frame = +3

Query: 144 LEEMHVHQVYEQIAGHFSTTRHKP-----WPKVVEFMRQVSTGAVVIDLGCGNGKNILKR 308
           +E+ +VH +Y ++A  +    HKP     WP+V +F+ Q S G++++D+GCG  K   ++
Sbjct: 8   VEQEYVHSIYSRLAT-YQQKEHKPSSPRIWPRVRQFVDQQSAGSIILDVGCGEAKYTSQK 66

Query: 309 DDILQLAGERSSGLLEECRQHVLGVSGAQCLQLDLLHAGIRDSCADFIICIAVIHHFSTK 488
             ++    +  S +L   ++  + +    CL  D ++  IRD   D I+ ++VIHH +T 
Sbjct: 67  SHVIGF--DTCSEVLSSSKKDDIDL----CLA-DAINIPIRDDSVDAILNVSVIHHLATT 119

Query: 489 ARRLQAVLTIKRLLSRNAQALITVWAKDQSKSNY 590
           ARR Q +    R L    Q LI  WA +Q    +
Sbjct: 120 ARRRQVLQECSRCLRIGGQMLIYAWAFEQPNGKF 153


>U70849-12|AAF99920.2|  236|Caenorhabditis elegans Hypothetical
           protein F29B9.1 protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 222 KVVEFMRQVSTG--AVVIDLGCGNGKNILK 305
           ++V+++    TG  A ++DLGCGNG  + K
Sbjct: 51  RIVKYLIDSKTGKDAKILDLGCGNGSVLRK 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,272,590
Number of Sequences: 27780
Number of extensions: 267942
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)