Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_H02
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g36310.1 68414.m04513 expressed protein 108 2e-24
At1g50940.1 68414.m05727 electron transfer flavoprotein alpha su... 32 0.25
At1g31600.3 68414.m03879 oxidoreductase, 2OG-Fe(II) oxygenase fa... 32 0.33
At1g31600.2 68414.m03877 oxidoreductase, 2OG-Fe(II) oxygenase fa... 32 0.33
At1g31600.1 68414.m03878 oxidoreductase, 2OG-Fe(II) oxygenase fa... 32 0.33
At1g58520.1 68414.m06653 early-responsive to dehydration protein... 29 3.1
At5g27330.1 68418.m03263 expressed protein 28 4.1
At5g65440.1 68418.m08230 expressed protein 28 5.4
At3g20650.2 68416.m02614 mRNA capping enzyme family protein cont... 28 5.4
At3g20650.1 68416.m02613 mRNA capping enzyme family protein cont... 28 5.4
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 27 7.2
At4g00770.1 68417.m00107 expressed protein 27 9.5
>At1g36310.1 68414.m04513 expressed protein
Length = 404
Score = 108 bits (260), Expect = 2e-24
Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 1/168 (0%)
Frame = +3
Query: 93 SVERTSTDDIDDEVAT-KLEEMHVHQVYEQIAGHFSTTRHKPWPKVVEFMRQVSTGAVVI 269
S+ +S+ + +T ++E+ +VH+VY+ IA HFS+TR WPKV F+ + +G+V++
Sbjct: 53 SIRVSSSSSLSSVKSTPEIEKKYVHRVYDAIAPHFSSTRFAKWPKVAAFLESLPSGSVIL 112
Query: 270 DLGCGNGKNILKRDDILQLAGERSSGLLEECRQHVLGVSGAQCLQLDLLHAGIRDSCADF 449
D GCGNGK + + + S L++ C G + L D ++ R+ D
Sbjct: 113 DAGCGNGKYLGLNPSCFFIGCDISHPLIKICSD-----KGQEVLVADAVNLPYREEFGDA 167
Query: 450 IICIAVIHHFSTKARRLQAVLTIKRLLSRNAQALITVWAKDQSKSNYL 593
I IAV+HH ST+ RR +A+ + R++ LITVWA +Q ++ L
Sbjct: 168 AISIAVLHHLSTENRRKKAIEELVRVVKPGGFVLITVWAAEQEDTSLL 215
>At1g50940.1 68414.m05727 electron transfer flavoprotein alpha
subunit family protein contains Pfam profile: PF00766
electron transfer flavoprotein, alpha subunit
Length = 363
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 129 EVATKLEEMH--VHQVYEQIAGHFSTTRHKPWPKVVEFMRQVSTGAVVIDLGCGNGKNIL 302
E A++ H V +V + F + +PW K+V+F+RQ + ++ GKNIL
Sbjct: 81 EAASQAASCHPSVSEVLVADSDKFEYSLAEPWAKLVDFVRQQGDYSHILASSSSFGKNIL 140
Query: 303 KR 308
R
Sbjct: 141 PR 142
>At1g31600.3 68414.m03879 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam profiles PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family, PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 431
Score = 31.9 bits (69), Expect = 0.33
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 24 RISLTFRWTRSGPCLCTYKTLCDSVER 104
R+S T R R+ PC C Y CDS ++
Sbjct: 404 RVSFTLRKVRNHPCSCKYPQYCDSQQQ 430
>At1g31600.2 68414.m03877 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam profiles PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family, PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 344
Score = 31.9 bits (69), Expect = 0.33
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 24 RISLTFRWTRSGPCLCTYKTLCDSVER 104
R+S T R R+ PC C Y CDS ++
Sbjct: 317 RVSFTLRKVRNHPCSCKYPQYCDSQQQ 343
>At1g31600.1 68414.m03878 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam profiles PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family, PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 431
Score = 31.9 bits (69), Expect = 0.33
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 24 RISLTFRWTRSGPCLCTYKTLCDSVER 104
R+S T R R+ PC C Y CDS ++
Sbjct: 404 RVSFTLRKVRNHPCSCKYPQYCDSQQQ 430
>At1g58520.1 68414.m06653 early-responsive to dehydration
protein-related / ERD protein-related low similarity to
ERD4 protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 657
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 117 DIDDEVATKLEEMH--VHQVYEQIAGHFSTTRHK 212
D DE++ K+EE+H +H VY QI H + K
Sbjct: 578 DRADEISGKMEELHKKLHNVYSQIPLHSQKSSSK 611
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 237 MRQVSTGAVVIDLGCGNGKNI---LKRDDILQLAGERSSGLLEECRQHV 374
MR+VS G V L C NG+ + KR+++++ S L+E + V
Sbjct: 200 MREVSLGEEVGRLKCENGRLVKERKKREEVIERGNRERSELVESLEEKV 248
>At5g65440.1 68418.m08230 expressed protein
Length = 1050
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/84 (28%), Positives = 37/84 (44%)
Frame = +3
Query: 24 RISLTFRWTRSGPCLCTYKTLCDSVERTSTDDIDDEVATKLEEMHVHQVYEQIAGHFSTT 203
RI LTF ++ S KT C V TS D+ EVA K E + + H+ T
Sbjct: 407 RIQLTFSYSSS----LDEKTKCGLVAETSAYDLVLEVAMKAERFQRRNLLFKGPWHWMIT 462
Query: 204 RHKPWPKVVEFMRQVSTGAVVIDL 275
R + V + ++ + V+D+
Sbjct: 463 RFASYYGVSDAYTRLRYLSYVMDV 486
>At3g20650.2 68416.m02614 mRNA capping enzyme family protein
contains Pfam PF03291: mRNA capping enzyme, large
subunit
Length = 369
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +3
Query: 216 WPKVVEFMRQVSTGAVVIDLGCGNGKNILKRDD--ILQLAG-ERSSGLLEECRQHVLG 380
W K V V+DL CG G +++K D I G + + G +E+CR G
Sbjct: 72 WIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSIEDCRTRYNG 129
>At3g20650.1 68416.m02613 mRNA capping enzyme family protein
contains Pfam PF03291: mRNA capping enzyme, large
subunit
Length = 370
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +3
Query: 216 WPKVVEFMRQVSTGAVVIDLGCGNGKNILKRDD--ILQLAG-ERSSGLLEECRQHVLG 380
W K V V+DL CG G +++K D I G + + G +E+CR G
Sbjct: 72 WIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSIEDCRTRYNG 129
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 354 EECRQ-HVLGVSGAQCLQLDLLHAGIRDSCADFIICIAVIHHFSTKARRLQAVLTIKRLL 530
E+CR+ + GA+ +++D A IR +CI + S++ +L+ ++ L
Sbjct: 572 EKCRRLKKMDSHGAESIKIDATRAAIRKLLTKIDVCIRSVDSISSRIHKLRDE-ELQPQL 630
Query: 531 SRNAQALITVW 563
+ LI +W
Sbjct: 631 IQLIHGLIRMW 641
>At4g00770.1 68417.m00107 expressed protein
Length = 440
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 87 CDSVERTSTDDIDDEVATKLEEM 155
CD+V+R S D+ +DEV K ++
Sbjct: 285 CDTVDRESEDEYNDEVEEKAAQL 307
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,394,449
Number of Sequences: 28952
Number of extensions: 244405
Number of successful extensions: 700
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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