Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H01
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    26   4.1  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   7.2  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   7.2  

>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 477 RGFYILNMLSELINMTSLYDQFINMSESKYVRSSFFITI 361
           RGF   N   + I    +     N+ E+KYVRS  ++TI
Sbjct: 51  RGFASFNKPPQTITEKIVQKFAQNIPENKYVRSGDYVTI 89


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -2

Query: 249 SLSKG-NPRGIVSK-HTLHRQAYLAFIVDISIDGK-TIPVLTGV 127
           +L +G +P+ +  K H LH++ Y  F +D    G+ T P  TG+
Sbjct: 280 ALEEGVSPKELCDKYHALHKEVYDWFEIDFDHFGRTTTPKQTGI 323


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/70 (20%), Positives = 31/70 (44%)
 Frame = -2

Query: 471  FYILNMLSELINMTSLYDQFINMSESKYVRSSFFITISDMSISLMVLDIVDKSFLYTCTS 292
            F IL++  EL+ +          S  +++      T+ D+S+S    ++  +   Y C +
Sbjct: 845  FEILSIADELLFLE--LKSIAQQSLLRFLNLKTLPTLMDLSLSYHAEELYSRCIDYACHN 902

Query: 291  VNFMLFVKKV 262
            + F L   ++
Sbjct: 903  IEFFLEANRI 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,842
Number of Sequences: 5004
Number of extensions: 41803
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)