Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H01
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine rece...    29   1.6  
AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    28   3.7  
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    28   4.9  

>U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 3 protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = -2

Query: 534 CFTFKKCCLFI*LFKYK*KRGFYI-LNMLSELINMTSLYDQFINMSESKYVRSSFFITIS 358
           CF F++CC    L  Y+ +  +YI + +LS       +     + SES  +  +  + + 
Sbjct: 111 CFVFERCCASYFLSDYEKRSRYYIGIFLLSASAGSGFILSYLYHKSESTLIYHTIAL-VF 169

Query: 357 DMSISLMVLDIVDK 316
           +M+ S+ +L IV+K
Sbjct: 170 NMTFSI-ILVIVEK 182


>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 136 DGSHDDEHLERQTAEGS 86
           DGSH+DEH E++   GS
Sbjct: 332 DGSHEDEHFEKKIMPGS 348


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = -2

Query: 423 YDQFINMSESKYVRSSFFITISDMSISLMVLDIVDKSFLYTCTSVNFMLFVKKVGI*ISL 244
           +D F+  ++ KYV+     TISD    L  L  ++   L     VN  +F   +    S+
Sbjct: 351 FDSFVTYTDGKYVQVKVAATISDQH-KLPELAKLNHPTLGEEARVNTNVFNFTME---SV 406

Query: 243 SKGNPRGIVSKHTLHRQAYL 184
              N   +V KH +H  +YL
Sbjct: 407 ENPNVLRVVPKHYVHTTSYL 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,678,382
Number of Sequences: 27780
Number of extensions: 236481
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)