Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G24
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0981 + 9931542-9931606,9931779-9933105 31 0.77
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718... 28 5.4
09_01_0039 - 687711-688607,692336-693113,693414-693501,693761-69... 27 7.2
07_01_1069 - 9493001-9493176,9493269-9493300,9493405-9493499,949... 27 7.2
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 27 9.5
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159... 27 9.5
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 27 9.5
05_04_0202 - 19010953-19013355 27 9.5
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 30.7 bits (66), Expect = 0.77
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 53 YGMGYNQMPFHPEHHHNRLRSPY 121
Y Y+Q PFHP HHH P+
Sbjct: 148 YNPYYHQEPFHPPHHHQYNPEPH 170
>01_05_0369 -
21468204-21468595,21471417-21471606,21471680-21471867,
21484028-21484580
Length = 440
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +1
Query: 175 ATRVGQHARRLLQKVPDARVIVSRH--RRQRIQGDYTFNLL**EGHRCQSPDRSSDGAS 345
AT G AR Q+ P+A RH +R R+ GD+ N G C DGA+
Sbjct: 101 ATSAG--ARETRQRRPEAEQWRQRHCCQRGRVSGDFPTNRRRRRGRGCTCEAEGEDGAA 157
>09_01_0039 -
687711-688607,692336-693113,693414-693501,693761-694148,
694176-694401,694527-694680,695073-695145
Length = 867
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 371 QKNYLDVRTLPDCVNVNGSWTYSQGVLKIVFPVKPDVATDVKI--HEVA 511
QKN ++ + D + NG+W + + + FP+ DV + I HE A
Sbjct: 687 QKNNCRLKWVSDLITENGTWDMGK-IYQYFFPIDADVICRIYISSHEEA 734
>07_01_1069 -
9493001-9493176,9493269-9493300,9493405-9493499,
9493623-9493898,9493976-9494039,9498048-9498113,
9498283-9498413,9499722-9499859,9499964-9500079,
9500166-9500331,9500435-9500548,9500609-9500692,
9500995-9501073,9501134-9501337,9501999-9502096,
9502187-9502284,9502359-9502495,9502606-9502824,
9503541-9503743,9503856-9504005
Length = 881
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 374 KNYLDVRTLPDCVNVNGSWTYSQGVLKIV 460
KN+L V DC+ G W Y+ V++++
Sbjct: 394 KNHLVVGNSEDCIPNRGRWNYNNKVVRLL 422
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 398 MS*HPNNSSVHRPRTYEQLAPSEDRSGL*QRCPSHQRRLKV 276
+S H +N S P EQL+ ED SG+ + +H +L++
Sbjct: 453 LSLHNSNKSYASPEAREQLSKLEDCSGMDKNHLNHLDKLRL 493
>08_02_1416 -
26915306-26915459,26915553-26915668,26915798-26915910,
26915995-26916130,26916219-26916338,26916472-26916648,
26916790-26916862,26916948-26917083,26917179-26918055,
26918138-26918331,26918438-26918620,26918730-26918796,
26918900-26919092,26919317-26919363,26919478-26919574,
26919663-26919790,26919905-26920009,26920763-26920879
Length = 1010
Score = 27.1 bits (57), Expect = 9.5
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +2
Query: 161 ELSSELRELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEKDIVVKARTGLLMV 340
ELS + + + ++ D +K P PA+S + + LT F K+++ + L ++
Sbjct: 275 ELSKAIEKTNTLIVDILKKKPCPAASECQQDRLSFIDPEGLTYF--KNLLEEDSLKLSLL 332
Query: 341 QAVHKYEGDVQ-KNYLDVRTLP-DCVNVNGSWTYSQGVLKI 457
+YE + K LD R D ++ GS + S G + +
Sbjct: 333 MLEKEYENAINTKGELDERMFANDEDSLLGSGSLSGGAINL 373
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 481 YVRFHWKNDF*YALTVSPTSVHIYAVRQCPNIQIILLYIALV 356
Y+R + D+ Y V H++A+ Q P+ Q++++ LV
Sbjct: 506 YLRSEYGKDYEYDAPVKLLDKHLHAMAQSPDEQLVVVSQVLV 547
>05_04_0202 - 19010953-19013355
Length = 800
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 78 LSIRNTITIG*EAHTSARTS-SIPVGSGPNSPA 173
LS T G E T +TS +PVG GP SPA
Sbjct: 119 LSFLLTDASGAEIRTHRKTSFRVPVGVGPGSPA 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,472,691
Number of Sequences: 37544
Number of extensions: 322871
Number of successful extensions: 1007
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -