Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G24
(537 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g05450.1 68417.m00827 adrenodoxin-like ferredoxin 2 similar t... 29 2.0
At2g25190.1 68415.m03012 expressed protein 29 2.0
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 2.6
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 2.6
At1g09540.1 68414.m01070 myb family transcription factor (MYB61)... 29 2.6
At5g67150.1 68418.m08465 transferase family protein similar to a... 28 3.4
At3g20475.1 68416.m02592 DNA mismatch repair MutS family protein... 28 4.5
At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase fa... 28 4.5
At3g57070.1 68416.m06354 glutaredoxin family protein contains Pf... 27 6.0
At4g25850.1 68417.m03718 oxysterol-binding family protein contai... 27 7.9
At4g04340.3 68417.m00621 early-responsive to dehydration protein... 27 7.9
At4g04340.2 68417.m00620 early-responsive to dehydration protein... 27 7.9
At4g04340.1 68417.m00619 early-responsive to dehydration protein... 27 7.9
At3g05680.1 68416.m00634 expressed protein 27 7.9
At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138... 27 7.9
>At4g05450.1 68417.m00827 adrenodoxin-like ferredoxin 2 similar to
SP|P46656 Adrenodoxin, mitochondrial precursor (Adrenal
ferredoxin) from Mus musculus, SP|P10109 Adrenodoxin,
mitochondrial precursor (Hepatoredoxin) from Homo
sapiens, SP|P29330 Adrenodoxin from Ovis aries; contains
Pfam profile: PF00111 2Fe-2S iron-sulfur cluster binding
domains; identical to cDNA GI: 28192430
Length = 197
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 233 SSSQGIEGNEYKVTIPLTSFDEKDIVVKARTGLLMVQAVHKYEGDVQ 373
SS G E E K+TI D ++I VK G+ +++A H+ + D++
Sbjct: 70 SSENGDEETE-KITIIFVDKDGEEIPVKVPIGMSVLEAAHENDIDLE 115
>At2g25190.1 68415.m03012 expressed protein
Length = 240
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Frame = -2
Query: 512 GQLHESSRP*LRQVSLEKRFLVRPDCKS---NFRSHLRSPAMS*HPNNSSV--------H 366
G+L ES + LR S L S N RSH+R+ + HP++SS
Sbjct: 165 GELSESEKKKLRNRSRSDPLLSSSPSSSTPDNHRSHIRAKSSGNHPSSSSSSSSGSKKNR 224
Query: 365 RPRTYEQLAPS 333
RP+ +Q +PS
Sbjct: 225 RPKAQDQKSPS 235
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 29 AAVSAAPYYGMGYN-QMPFHPEHHHNRLRSPY 121
A + +PYY GY+ Q P P HH+ L PY
Sbjct: 187 ATIMPSPYY-YGYSLQAPRVPYQHHHHLPQPY 217
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 47 PYYGMGYNQMPFHPE-HHHNRLRSPYF 124
PY + P++P+ HHH R SP F
Sbjct: 206 PYQHHHHLPQPYNPQQHHHQRFSSPSF 232
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 29 AAVSAAPYYGMGYN-QMPFHPEHHHNRLRSPY 121
A + +PYY GY+ Q P P HH+ L PY
Sbjct: 187 ATIMPSPYY-YGYSLQAPRVPYQHHHHLPQPY 217
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 47 PYYGMGYNQMPFHPE-HHHNRLRSPYF 124
PY + P++P+ HHH R SP F
Sbjct: 206 PYQHHHHLPQPYNPQQHHHQRFSSPSF 232
>At1g09540.1 68414.m01070 myb family transcription factor (MYB61)
contains PFAM profile: myb DNA-binding domain PF00249
Length = 366
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 146 GRFWSELSSELR-ELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEKD 304
G WS+++S L DN + + + +GI+ N +K + SF +KD
Sbjct: 86 GNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRGIDPNTHKPISEVESFSDKD 139
>At5g67150.1 68418.m08465 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 448
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 134 VFDTGRFWSELSSELRELDNML-ADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEKDIV 310
V D FWS ++ N AD RKFP ++G EY + IPL + + V
Sbjct: 169 VADGSSFWSFFNTWSEICFNGFDADHRRKFPPLLLRGWFLDGIEYPIRIPLPETETPNRV 228
Query: 311 V 313
V
Sbjct: 229 V 229
>At3g20475.1 68416.m02592 DNA mismatch repair MutS family protein
similar to SP|O43196 MutS protein homolog 5 {Homo
sapiens}; contains Pfam profile PF00488: MutS domain V
Length = 321
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 140 DTGRFWSELSSELRELDNMLADFYRK 217
+T RF+ +S+ RELDN+L D Y K
Sbjct: 4 ETQRFFYH-TSKTRELDNLLGDIYHK 28
>At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase family
protein similar to Potential phospholipid-transporting
ATPase (EC 3.6.3.1) from Homo sapiens [SP|O43520], Mus
musculus [SP|P70704]; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 1218
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +2
Query: 23 LAAAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSSELRE 184
L + PY+ Q HP HH Y+ DV D R W+ ++ RE
Sbjct: 1124 LVTVTTVLPYFAHISFQRFLHPLDHHIIQEIKYYKRDVEDR-RMWTRERTKARE 1176
>At3g57070.1 68416.m06354 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 417
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 464 EKRFL--VRPDCKSNFRSHLRSPAMS*HPNNSSVHRPRTYEQLAPSEDRS 321
E+ FL + P S+++ L S +S H N + HRP +PS + S
Sbjct: 190 EESFLSDLDPSIVSSYKKALSSKLLSNHSNTRNPHRPTKSLSCSPSSNPS 239
>At4g25850.1 68417.m03718 oxysterol-binding family protein contains
Pfam profile PF01237: Oxysterol-binding protein
Length = 383
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 92 VPDGKAFGCTPYRSTVPP 39
V DGK + C+P + TVPP
Sbjct: 360 VKDGKDWDCSPLQPTVPP 377
>At4g04340.3 68417.m00621 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = -3
Query: 511 GNFMNLHVRSYVRF-HW 464
G F+NL +RSY++F HW
Sbjct: 59 GRFVNLELRSYLKFLHW 75
>At4g04340.2 68417.m00620 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = -3
Query: 511 GNFMNLHVRSYVRF-HW 464
G F+NL +RSY++F HW
Sbjct: 59 GRFVNLELRSYLKFLHW 75
>At4g04340.1 68417.m00619 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = -3
Query: 511 GNFMNLHVRSYVRF-HW 464
G F+NL +RSY++F HW
Sbjct: 59 GRFVNLELRSYLKFLHW 75
>At3g05680.1 68416.m00634 expressed protein
Length = 2057
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +2
Query: 128 EDVFDTG---RFWSELSSELRE-LDNMLADFYRKFPTPASSSQGIEGNEYKVTIP 280
+D++ G +FW E L E L RK PT SSS+ +G V IP
Sbjct: 1400 DDLYQRGLEDKFWWECPETLPERLPQSSLPAKRKLPTLESSSRRAKGENSSVDIP 1454
>At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as 'axi
1 protein from Nicotiana tabacum -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 567
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 92 HHHNRLRSPYFGEDVFDTGRFWSELSSELRELDNM 196
H+H+ R P D++D F S LS+++R +D +
Sbjct: 193 HYHSIWRDPSKFGDIYDEEFFVSTLSNDVRVVDTI 227
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,066,751
Number of Sequences: 28952
Number of extensions: 247749
Number of successful extensions: 772
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -