Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G23
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  

>SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1239

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 145  TCFVIVLKKNLKIHRRMMLSTICNG 219
            TC V+VL+K+L  HR  +L +   G
Sbjct: 1060 TCIVVVLRKSLTAHRSPVLGSYYGG 1084


>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1735

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 343 CPPLGVFPKNSPKKS 299
           CPP  V+ KNSP+KS
Sbjct: 260 CPPTLVYDKNSPRKS 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,473,051
Number of Sequences: 59808
Number of extensions: 125969
Number of successful extensions: 186
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)