Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G23
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74030-10|CAA98439.1|  317|Caenorhabditis elegans Hypothetical p...    28   2.7  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    27   8.3  

>Z74030-10|CAA98439.1|  317|Caenorhabditis elegans Hypothetical
           protein D1054.11 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 355 VTIFCPPLGVFPKNSPKKSGSKLIYYFRAARCRCPFWNHDTKTHGHHYK 209
           VT  C   G  P N+P  S      Y+        +W++D+ +  H +K
Sbjct: 11  VTAVCAQYGSGPANNPPASSYSSNVYYPPPVYGSVYWDYDSGSREHRHK 59


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 349 IFC-PPLGVFPKNSPKKSGSKLIYYFRAARCRCP 251
           I+C  P+      S  K+G K ++   A  C+CP
Sbjct: 316 IYCGEPVDCLVNGSDCKNGGKCVFALAATTCQCP 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,658,035
Number of Sequences: 27780
Number of extensions: 94950
Number of successful extensions: 213
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)