Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G22
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    26   2.2  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   2.2  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   5.1  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   6.8  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    24   6.8  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   9.0  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    24   9.0  

>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 363 IPTTHSETVPKKKPSNRIRLLPVNQ 289
           I  T S   PKKKPS  +  LP N+
Sbjct: 232 IAETPSNVTPKKKPSPEVPKLPDNR 256


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -1

Query: 226 DRSNPPGERSSRFKRPTEPQL-R*RPE--TIGGDFSLSPEGEVLWMSSAR*RSEKLSQPR 56
           D+SN PG+  S F +  E Q+ + +PE   +   FS +P  + ++ ++     E L Q +
Sbjct: 706 DKSNTPGKNFSIFGKTAETQVEQKKPENNVLTKPFSFAPSDKSMFAANIPSAGEGLDQQK 765


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 227 YCKGARSMAFEG*LEHISLFHWLTGRSL 310
           Y +  R +   G   HIS F W TG+ L
Sbjct: 109 YTRDGRMILLGGRKGHISAFDWRTGKLL 136


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 72  FSERHRALLIQRTSPSGEREKSPPMVSGR*RS 167
           F  R+R  L+ R SPS  R  SPP      RS
Sbjct: 81  FRSRYRGSLLNRNSPS-LRSLSPPATPATPRS 111


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 4   RSMVTAEPPRKTSRRQALLVDSTSLNVIGRYSSK 105
           RS      P         LVDS SL ++GR S K
Sbjct: 62  RSYKCTSVPETAPHEIYRLVDSNSLQLVGRVSQK 95


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 375 SSPLIPTTHSETVPKKKP 322
           S  L P +   T+PKKKP
Sbjct: 104 SESLTPLSFGHTIPKKKP 121


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 235 FTIDRSNPPGERSSRFKRPTEPQLR*RPETIGGDFSLSPEGE 110
           F + +++   E S + +    P L  RP+ +G D +LSP  E
Sbjct: 102 FGVKQASTLTEASEQKQENAIPVLLTRPDILGVDITLSPGEE 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,834
Number of Sequences: 5004
Number of extensions: 31419
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)