Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G22
         (376 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0137 - 21080263-21081894                                         28   2.7  
03_06_0654 - 35307122-35307205,35307381-35307444,35307486-353075...    28   2.7  
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645     27   3.6  
04_01_0056 - 579934-579993,580064-580243,580349-580507,581004-58...    27   3.6  
11_04_0072 - 13192600-13192605,13192750-13192795,13192934-131930...    27   6.3  

>09_06_0137 - 21080263-21081894
          Length = 543

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 210 LVNAAPALRDPLSPNSANDLKPSEAISPS 124
           L +AAP L  P  P    +L+P  A++PS
Sbjct: 22  LCDAAPTLAPPPEPEPEPELEPEPALAPS 50


>03_06_0654 -
           35307122-35307205,35307381-35307444,35307486-35307536,
           35307881-35307993,35308083-35308164,35308621-35308741,
           35308821-35308980,35309335-35309396,35309548-35309707,
           35309794-35310021
          Length = 374

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 306 ALFYYSAFFLERFPNGLWELTG 371
           ++F+Y AF   RFP+G + LTG
Sbjct: 189 SVFHYGAFVHLRFPDGNYHLTG 210


>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
          Length = 375

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = -2

Query: 336 PKKKP-SNRIRLLPVNQ*NKLMCSS*PSNA-IDLAPLQ*IEAIHLVNAAPALRDPLSPNS 163
           P+K+P   ++   P +Q + +  SS P+   +   P+         +A P  +DP  PN+
Sbjct: 129 PQKRPMQQKLPFPPSSQKSLMEPSSDPTQKKLPFLPISQKRCSGTDDAMPHRKDPALPNT 188

Query: 162 ANDL-KPSEAISPSPQKEK 109
            ND+ + S+ I  S  ++K
Sbjct: 189 LNDINRRSQEIGKSLARKK 207


>04_01_0056 -
           579934-579993,580064-580243,580349-580507,581004-581050,
           583772-583895,584093-584956
          Length = 477

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 317 LLGFFFGTVSEWVVGINGLE 376
           L+GFF GT+ + +VG+ G E
Sbjct: 228 LVGFFGGTIGDIIVGVRGWE 247


>11_04_0072 -
           13192600-13192605,13192750-13192795,13192934-13193047,
           13193694-13193815,13193914-13193985,13194808-13194957,
           13195386-13195388
          Length = 170

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 272 HISLFHWLTGRSLILLLGFFFGTVSEWV 355
           H  L+ W+   +    LG   GTV+EWV
Sbjct: 55  HYLLYFWVNNNATRETLGIKKGTVNEWV 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,630
Number of Sequences: 37544
Number of extensions: 222943
Number of successful extensions: 564
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)