Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G22
(376 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_1524| Best HMM Match : 7tm_6 (HMM E-Value=0.51) 27 3.7
SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0) 27 5.0
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_55760| Best HMM Match : G_glu_transpept (HMM E-Value=0.0012) 27 6.5
SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
>SB_6794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 269 EHISLFHWLTGRSLILLLGFFFGTVSEWVVGINGLE 376
+H++ + LT ++ L F FGT+ WV G GL+
Sbjct: 654 DHLASLYHLTNVTM-LSFSFLFGTLYIWVAGRGGLQ 688
>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4247
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 130 SLSPEGEVLWMSSAR*RSEKLSQPRELAFGKSFGVVLR*P 11
+++P+G+ +++AR R L P EL G S VVL P
Sbjct: 1125 NITPDGKAALLATARERGNILCGPVELESGSSSRVVLTCP 1164
>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 249 IDLAPLQ*IEAIHLVNAAPALRDPLSPNSANDLKPS 142
+D +P IEA L N PA+R+PL N P+
Sbjct: 338 VDCSPSNLIEANRLRNHEPAMRNPLQINGKPPWAPN 373
>SB_1524| Best HMM Match : 7tm_6 (HMM E-Value=0.51)
Length = 407
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 207 PGGLLRSIVKAQGLWHSKVNSNTLAC 284
PG LL++I + GLW+ + T+ C
Sbjct: 56 PGILLKTITRVTGLWNPRKRGYTVMC 81
>SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)
Length = 1048
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 89 GAT-HPKNFSFWGEGEIASDGFRSLAELGLSGSLKAG 196
G+T +P+ +SF +G I S +RS G SL G
Sbjct: 836 GSTAYPERYSFRADGSIRSSSYRSSFSRGPRSSLATG 872
>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 108 TSPSGEREKSPPMVSGR*RSW 170
TSPSG + KSPP V + R W
Sbjct: 482 TSPSGTKTKSPPPVMAK-RQW 501
>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 129 EKSPPMVSGR*RSWGSVGLLKRELRSPGGLLRSIVKAQGLW 251
E SP V+G W S +R RS ++ +++A LW
Sbjct: 157 EVSPDCVTGNADCWSSTWASRRTTRSSLAVIAHVLQADVLW 197
>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 171 PNSANDLKPSEAISPSPQKEKFFG*VAPDDVQRS*VNQESLPSGSLSGWFC 19
P S N KPS + P F ++P D Q S +S P S+S C
Sbjct: 464 PVSPNPAKPSNILFEGPSSSTVFKSLSPTD-QMSNSPSQSSPGSSVSDLSC 513
>SB_55760| Best HMM Match : G_glu_transpept (HMM E-Value=0.0012)
Length = 204
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 128 GEIASDGFRSLAELGLSGSLKAGAAFTRWIASIYCKGARSMAFEG 262
G ++SD +ELG +K G+A +AS++C G ++ G
Sbjct: 52 GVVSSDA-DECSELGAKMLIKGGSAVDSAVASLFCVGLLNLHSTG 95
>SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1642
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = +2
Query: 149 FRSLAELGLSGSLKAGAAFTRWIASIYCKGARSMAFEG*LEHISLFHWLTGRSLILL 319
F+ L E ++ K + W+ ++C+ R + +G +I + +TG ++ L
Sbjct: 423 FQDLYEDNVTSPSKVEWSIFAWVIGLFCQEVRELYLQGVKRYIQQWWNVTGMLMVTL 479
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Frame = -2
Query: 375 SSPLIPTTHSETVPKKKPS-----NRIRLLPVNQ 289
+ P++PTTH + +K+PS N R+ P++Q
Sbjct: 3250 AKPVMPTTHKQQQQEKQPSEKAPENAARMSPMSQ 3283
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,174,351
Number of Sequences: 59808
Number of extensions: 241588
Number of successful extensions: 591
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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