Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G18
         (371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_55550| Best HMM Match : PLAC8 (HMM E-Value=0.00022)                 28   2.8  
SB_39600| Best HMM Match : Sushi (HMM E-Value=0)                       28   2.8  
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   3.7  
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05)            27   3.7  
SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.7  
SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)                   27   6.4  
SB_8606| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  

>SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 246 HTILTTNQTIRTHRNMKLW*CYQTALSHISHDLIRSTNLI 365
           HT  TT  T+R H   +    + T  SH  HD    T+ +
Sbjct: 108 HTYYTTTLTVRPHNTTRSHSRHDTTRSHSRHDHTHDTSTL 147


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 15  PITLTKPNYPNQANYPEQANYP*PTQLP*ASQVS 116
           P     PN P QAN+P   N P P  +P   Q+S
Sbjct: 697 PANAPPPNIPIQANFPR--NIPPPNYIPPTQQMS 728


>SB_55550| Best HMM Match : PLAC8 (HMM E-Value=0.00022)
          Length = 236

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 6  LTNPITLTKPNYPNQANYPEQANYP 80
          +  P+T  +P YP Q  YP Q  YP
Sbjct: 19 MAQPVT-GQPGYPPQQGYPPQQGYP 42


>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1368

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 9   TNPITLTKPNYPNQANYPEQANYP 80
           TN    T  N+P+ AN+P  AN+P
Sbjct: 638 TNNNHPTNANHPSNANHPSNANHP 661



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 9   TNPITLTKPNYPNQANYPEQANYP 80
           TN    +  N+P+ AN+P  AN+P
Sbjct: 644 TNANHPSNANHPSNANHPSNANHP 667


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 311 PNGTITYQPRPDPFYQPHKP 370
           P+    Y+P PDP   PH+P
Sbjct: 70  PSKIAAYEPTPDPSRPPHRP 89


>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 311 PNGTITYQPRPDPFYQPHKP 370
           P+    Y+P PDP   PH+P
Sbjct: 371 PSKIAAYEPTPDPSRPPHRP 390


>SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05)
          Length = 626

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 311 PNGTITYQPRPDPFYQPHKP 370
           P+    Y+P PDP   PH+P
Sbjct: 287 PSKIAAYEPTPDPSRPPHRP 306


>SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 855

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 311 PNGTITYQPRPDPFYQPHKP 370
           P+    Y+P PDP   PH+P
Sbjct: 151 PSKIAAYEPTPDPSRPPHRP 170


>SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 670

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 311 PNGTITYQPRPDPFYQPHKP 370
           P+    Y+P PDP   PH+P
Sbjct: 167 PSKIAAYEPTPDPSRPPHRP 186


>SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)
          Length = 1709

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 255 LTTNQTIRTHRNMKLW*CYQTALSHISH 338
           L   +T+ +H+N K    Y+T L H+ H
Sbjct: 227 LMVQETLESHKNKKDSNIYETKLGHVCH 254


>SB_8606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 255 LTTNQTIRTHRNMKLW*CYQTALSHISH 338
           L   +T+ +H+N K    Y+T L H+ H
Sbjct: 269 LMVQETLESHKNKKDSNIYETKLGHVCH 296


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,360,824
Number of Sequences: 59808
Number of extensions: 71145
Number of successful extensions: 269
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)