Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G18
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    28   2.4  
U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical pr...    26   9.9  

>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 15  PITLTKPNYPNQANYPEQANY 77
           P  +  P YP QA YP QA Y
Sbjct: 465 PQVMAPPGYPTQAAYPPQAVY 485


>U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical
           protein T10E9.4 protein.
          Length = 649

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 9   TNPITLTKPNYPNQANYPEQANYP*PTQ 92
           T   T T   YP   NYP  AN P P+Q
Sbjct: 455 TESATPTLGPYPYLTNYPCDANKPIPSQ 482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,681,947
Number of Sequences: 27780
Number of extensions: 51171
Number of successful extensions: 169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)