Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G17
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935...    31   0.48 
05_03_0338 + 12652966-12653017,12653813-12653860,12653924-126540...    30   1.1  

>04_04_1228 +
           31888350-31892228,31892568-31893298,31893511-31893586,
           31894089-31894164,31894571-31894656,31895414-31895482,
           31895579-31895588,31895711-31896207
          Length = 1807

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -2

Query: 421 FRQLCEEV*TLLII*ESRASFRVQNVFARYSTIAGLRGSRCDLPR----HCSDTLVRRYH 254
           F  L +E   L ++   + SF V  +F ++ST+  LR  R   PR    H +  L R YH
Sbjct: 707 FHDLFKEASALRVLHLPKMSFPVGFIFNKFSTLVHLRYIRLGAPRRSKTHLTSALSRFYH 766

Query: 253 NR 248
            R
Sbjct: 767 LR 768


>05_03_0338 +
           12652966-12653017,12653813-12653860,12653924-12654080,
           12654104-12654206,12654866-12655111,12655802-12656204,
           12656257-12656354,12656460-12657044,12657120-12657566
          Length = 712

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 424 IFRQLCEEV*TLLII*ESRASFRVQNVFARYSTIAGLRGSRCDLPRHCSDTLV--RRYHN 251
           IF    +E   + I  E R  +  Q+V   +   A L+G R ++P  CSD LV   +   
Sbjct: 250 IFTNQFQENSRVRIFDEPRNQYLGQHVDGNHYAEAVLKGPRLEIPLFCSDDLVDWLKQCE 309

Query: 250 RFFLIIVS 227
           +FF + VS
Sbjct: 310 KFFELTVS 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,706,459
Number of Sequences: 37544
Number of extensions: 239497
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)