Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G17
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46280| Best HMM Match : 7tm_1 (HMM E-Value=3.89981e-42)             28   4.6  
SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)               27   8.0  
SB_35893| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_22822| Best HMM Match : TAFH (HMM E-Value=2.5)                      27   8.0  

>SB_46280| Best HMM Match : 7tm_1 (HMM E-Value=3.89981e-42)
          Length = 504

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 361 FRVQNVFARYSTIAGLRGSRCDL--PRHCSDTL 269
           F+  ++   Y TI  LR S CD   PR C  TL
Sbjct: 374 FKATSINTGYDTINSLRKSNCDFFPPRPCETTL 406


>SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)
          Length = 417

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 130 YLMFSSINPHFNSKC---SLYFRLKPISSTKFLFS 35
           +L+FSS +PH   K    SL  R++ I STK  F+
Sbjct: 302 HLLFSSCHPHHTKKAIPYSLALRIRRICSTKESFN 336


>SB_35893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -2

Query: 130 YLMFSSINPHFNSKC---SLYFRLKPISSTK 47
           +L+FSS +PH+  K    SL  RL+ I ST+
Sbjct: 48  HLLFSSCHPHYTKKATPYSLALRLRRICSTE 78


>SB_22822| Best HMM Match : TAFH (HMM E-Value=2.5)
          Length = 342

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 130 YLMFSSINPHFNSKC---SLYFRLKPISSTKFLFS 35
           +L+FSS +PH   K    SL  R++ I STK  F+
Sbjct: 162 HLLFSSCHPHHTKKAIPYSLALRIRRICSTKESFN 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,774,676
Number of Sequences: 59808
Number of extensions: 279337
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)