Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G15
(348 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98) 28 1.8
SB_21821| Best HMM Match : MRG (HMM E-Value=0) 28 2.4
SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11) 27 5.5
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_58936| Best HMM Match : GBP (HMM E-Value=2.2e-05) 26 7.3
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3
SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4) 26 9.7
SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59) 26 9.7
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 26 9.7
SB_13357| Best HMM Match : 7tm_1 (HMM E-Value=0.0011) 26 9.7
>SB_26296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 52 ALLILGFIASQATCMNIRYKRQIENNANLFIDKNGWNKSQDGNRP 186
A +I GF+ + C +RY Q+ N +N W+ S NRP
Sbjct: 6 ATIIRGFLKFRIICEKVRYFTQLRACYN--PQQNKWDTSHTNNRP 48
>SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)
Length = 997
Score = 28.3 bits (60), Expect = 1.8
Identities = 24/68 (35%), Positives = 31/68 (45%)
Frame = +1
Query: 64 LGFIASQATCMNIRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDNNY 243
LG I SQA NIR Q N +L + N + P+Q GY+ PL +NY
Sbjct: 612 LGQITSQAIGSNIR---QDVANVSLPLQMPISNPKTSVPQGGATPMQFGYQGYGPLQHNY 668
Query: 244 NFIAFIFP 267
+ IFP
Sbjct: 669 GDMNTIFP 676
>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
Length = 292
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 67 GFIASQATCMNIRYKRQIENNANLFIDKNGWNKSQDGNRPEWIP 198
G + +A C+ + K E A I NGWNK+ D EW+P
Sbjct: 18 GPLIYEAKCIRGQLK---EKTARYLIHYNGWNKNWD----EWVP 54
>SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)
Length = 587
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 201 NWDPFGTVPVLRFVPSVLVNK*IRVVFYLPFVS 103
+W P VP+ + P V VNK +R + P +S
Sbjct: 276 SWKPADVVPLPKLKPVVDVNKHLRPISLTPAIS 308
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 26.6 bits (56), Expect = 5.5
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 175 GNRPEWIPIQNGYRIQYPLDNNYNFIAFIFPN 270
G+R ++ IQNG + ++ + + ++FPN
Sbjct: 1122 GSRDSFVAIQNGRQWMLDIEESISIAFYVFPN 1153
>SB_58936| Best HMM Match : GBP (HMM E-Value=2.2e-05)
Length = 480
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 273 LIRKNEGYKIIIVVQRVLNSVTILNWDPFGTVPVLRF 163
L+ KN+ + VV R+L ++T + D F + P+L +
Sbjct: 7 LVSKNKQEGALGVVSRILTNLTSVGADIFKSAPLLNY 43
>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 26.2 bits (55), Expect = 7.3
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +2
Query: 2 CHINYFYY----YNLKWISCARFLYWVL 73
CH+NY Y+ +++ W+ ++Y V+
Sbjct: 130 CHVNYMYHVIWLFHVSWLCHVNYMYHVI 157
>SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)
Length = 391
Score = 25.8 bits (54), Expect = 9.7
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 235 CPKGIEFGNHSEL 197
CPKG+++G H +L
Sbjct: 141 CPKGLQYGGHDDL 153
>SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59)
Length = 1060
Score = 25.8 bits (54), Expect = 9.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 154 GWNKSQDGNRPEWIPIQNGYRIQ 222
G ++ QDG W P++ G R++
Sbjct: 24 GCSRQQDGGHGSWNPLRKGQRLE 46
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 121 ENNANLFIDKNGWNKSQDGNRPEWIPIQNGY 213
E+N + FID+ W + Q W + GY
Sbjct: 383 EDNEDNFIDREEWEEEQKRLDRAWYDMDTGY 413
>SB_13357| Best HMM Match : 7tm_1 (HMM E-Value=0.0011)
Length = 358
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 220 EFGNHSELGSIRDGSRPEICSIR 152
+FGN ++ GS+ G RP S R
Sbjct: 220 QFGNRTKTGSLSGGHRPSCSSAR 242
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,372
Number of Sequences: 59808
Number of extensions: 216098
Number of successful extensions: 480
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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