Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G15
         (348 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL137661-1|CAB70863.1|  661|Homo sapiens hypothetical protein pr...    29   5.3  
AK075278-1|BAC11515.1|  429|Homo sapiens protein ( Homo sapiens ...    29   5.3  
AC098818-1|AAY40926.1|  662|Homo sapiens unknown protein.              29   5.3  
AB126942-1|BAD02485.1|  622|Homo sapiens hypothetical protein pr...    28   7.0  
BC142729-1|AAI42730.1|  532|Homo sapiens IFT172 protein protein.       28   9.3  
BC142675-1|AAI42676.1|  532|Homo sapiens IFT172 protein protein.       28   9.3  

>AL137661-1|CAB70863.1|  661|Homo sapiens hypothetical protein
           protein.
          Length = 661

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 220 EFGNHSELGSIRDGSRPEI 164
           EFGNH   G++R G+ PEI
Sbjct: 418 EFGNHRPKGALRPGNGPEI 436


>AK075278-1|BAC11515.1|  429|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90797 fis, clone THYRO1001770, weakly similar to
           PROBABLE SERINE/THREONINE-PROTEIN KINASE YNL020C (EC
           2.7.1.-). ).
          Length = 429

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 220 EFGNHSELGSIRDGSRPEI 164
           EFGNH   G++R G+ PEI
Sbjct: 170 EFGNHRPKGALRPGNGPEI 188


>AC098818-1|AAY40926.1|  662|Homo sapiens unknown protein.
          Length = 662

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 220 EFGNHSELGSIRDGSRPEI 164
           EFGNH   G++R G+ PEI
Sbjct: 403 EFGNHRPKGALRPGNGPEI 421


>AB126942-1|BAD02485.1|  622|Homo sapiens hypothetical protein
           protein.
          Length = 622

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 75  SQSGDLHEYKIQKADRKQREFIY*QERMEQISGREPSRMDPNSEWLPNSIPFG 233
           S  GDL E   + ++ K REFI   +    I+   PSR +   E   N   FG
Sbjct: 75  SIQGDLEEDSNRLSESKLREFIEKLKINHLITNHSPSRFNLTKECNDNEAAFG 127


>BC142729-1|AAI42730.1|  532|Homo sapiens IFT172 protein protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 223 IEFGNHSELGSIR-DGSRPEICSIRSCQ*INSRC 125
           +E+GN+  LGS+R +   P + S+R    IN RC
Sbjct: 420 VEYGNNDTLGSVRTEFMNPHLISVR----INERC 449


>BC142675-1|AAI42676.1|  532|Homo sapiens IFT172 protein protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 223 IEFGNHSELGSIR-DGSRPEICSIRSCQ*INSRC 125
           +E+GN+  LGS+R +   P + S+R    IN RC
Sbjct: 420 VEYGNNDTLGSVRTEFMNPHLISVR----INERC 449


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,084,897
Number of Sequences: 237096
Number of extensions: 1090404
Number of successful extensions: 5559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5559
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)