Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G14
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      30   0.36 
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   3.3  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   4.4  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   5.8  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   7.7  

>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 144 YDTCIQNCSLRLRRYH*VHRFHQIH*KVFPYSNV 43
           YD+ I N S   RRY  V +  QI  K FPY N+
Sbjct: 59  YDSIILNDSGLERRYAFVQKLEQILKKEFPYKNI 92


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +3

Query: 90   ELSGNVVNEGYNFGYMYHNGIPYPVRPNHFHLDH-PEYLGE--LEKIKDYERRLRDGIEN 260
            +LSGN +    NF  + H  + Y       ++D+   Y+ +  LE + DYE+R++   E 
Sbjct: 973  KLSGNPIISTPNF--LTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQRIKVLQEL 1030

Query: 261  GYI 269
            GYI
Sbjct: 1031 GYI 1033


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 432 NYNNPSSATPLLVPSALEHYQTALTDPAFYMIWKRVLKMFSLLHQRL 572
           N ++P  +  +  P  L     A T+P    ++++ L++ SL HQRL
Sbjct: 230 NKSSPFGSATVQTP-CLHSVPDAFTNPDVATLYQKFLRLQSLEHQRL 275


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 492 GSVQ-GQMEPITGLR-YWDCYNYVDATKSFLE 403
           G+V+ G +EP  G   Y D   YVD TKS+ E
Sbjct: 15  GNVKIGNVEPAKGNEGYVDNAGYVDCTKSYFE 46


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 203 QILWMIEVEMIRSNWIWYTVMIHVSKIVAFVYDVTTKF 90
           Q+ W + V+M+  NW  Y   + ++  + F+ D  T +
Sbjct: 709 QVYWRLGVQMVALNWQTYDTGLQINDAL-FIADPPTGY 745


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,479
Number of Sequences: 5004
Number of extensions: 59670
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)