Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G14
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical...    28   5.4  
AF022970-1|AAB69895.1|  142|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF016678-7|AAB66154.3|  340|Caenorhabditis elegans Serpentine re...    28   5.4  
Z81132-9|CAB03438.1|  320|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical
           protein Y39A1A.16 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 264 NHFQFHHVDVFRNPLFFQ 211
           NHF++H +D F  PLF+Q
Sbjct: 70  NHFEYH-IDKFHQPLFYQ 86


>AF022970-1|AAB69895.1|  142|Caenorhabditis elegans Hypothetical
           protein F13A2.1 protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 135 MYHNGIPYPVRPNHFHL-DHPEYLGELEKIKDYERRLRDGIEN 260
           M  NG P+P    HFH+ D  + L ELE  +D E R +   +N
Sbjct: 29  MVLNGTPFPDILRHFHVSDFSKELAELEIKQDAEFRKKSLWQN 71


>AF016678-7|AAB66154.3|  340|Caenorhabditis elegans Serpentine
           receptor, class i protein45 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 132 YMYHNGIPYPVRPNHFHLDHPEYLGELEKIKDY 230
           + YH GI   + P   +L +PE+  E   +K++
Sbjct: 165 FWYHAGIAEDLLPGFVNLTYPEFKAEFSNLKNF 197


>Z81132-9|CAB03438.1|  320|Caenorhabditis elegans Hypothetical
           protein T26E4.11 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 158 IWYTVMIHVSKIVAFVYDVTTKFTDFTKS 72
           +W  V + + + V   Y + TK  DFT S
Sbjct: 99  VWLAVSLAILRAVVIKYPINTKIQDFTSS 127


>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 75  FGEIGELSGNVVNEGYNFGYM 137
           F ++G+ + ++ N+GYNFG++
Sbjct: 6   FADLGKSAKDLFNKGYNFGFL 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,170,933
Number of Sequences: 27780
Number of extensions: 324202
Number of successful extensions: 940
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)