Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G14
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19516.1 68416.m02474 hypothetical protein                          29   3.8  
At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative (CH...    27   8.7  

>At3g19516.1 68416.m02474 hypothetical protein
          Length = 143

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +3

Query: 210 LEKIKDYERRLRDGIENG-----YIINSTGDHVPIHTPE-GIDILGRLIEAGVASPNVQY 371
           +EK+KD+E+RLR+  E       Y+         I T E G D++ R  +   +  N  +
Sbjct: 1   MEKLKDFEKRLRESTEKSQNLKDYLGIIEFSKTSIETKELGADLIPRYFQFYTSHSNQAF 60

Query: 372 --YKDFISS 392
             YKD I +
Sbjct: 61  DAYKDIIEA 69


>At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative
           (CHX13) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 831

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 186 DHPEYLGELEKIKDYERRLRDGIENGYIINSTGD 287
           D   Y     KI   E  +RDG+E   +I+S GD
Sbjct: 701 DFKSYAANKGKIHYVEEIVRDGVETTQVISSLGD 734


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,176,132
Number of Sequences: 28952
Number of extensions: 295585
Number of successful extensions: 804
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)