Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G13
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 93 4e-20
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 40 3e-04
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 26 3.9
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 26 5.2
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 26 5.2
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 5.2
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 6.9
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 6.9
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 9.1
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 9.1
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 9.1
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 92.7 bits (220), Expect = 4e-20
Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Frame = +3
Query: 216 EADKGLQTSEDARFYALSRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQ 392
+ + GL ++A +A+S +F +P + K LVVQ+ V E+ ++CGG YLK+
Sbjct: 87 KGEAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTH 145
Query: 393 KDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLY 551
+M Y IMFGPD CG + VH IF +K + HL + T+LY
Sbjct: 146 GEMSNSIDYRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLY 204
Query: 552 TLIVKPDNTYEVLIDNEKVESGELEAD 632
TLIVKPD T+EV I+ + V G L D
Sbjct: 205 TLIVKPDQTFEVRINGDVVRQGSLFYD 231
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 39.9 bits (89), Expect = 3e-04
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 7/183 (3%)
Frame = +3
Query: 96 VFFEEKFSDD--SWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL- 266
VF E+ S+D +W S W K+ G + L + + GL T + + + L
Sbjct: 32 VFSEQFTSEDITTWRSRW--RAPVNKDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILI 88
Query: 267 SRKFKPFSNEGK--PLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPD 440
S P + + P+V+ F VK + CG Y+ + + + K++ E P I FG
Sbjct: 89 SNLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVK 147
Query: 441 ICGPGTKKVHVIFSYKGK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVES 614
CG I SY GK HL + T +YTL+++ + T + D V +
Sbjct: 148 KCGMFDYISLSIISYDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ-NTTVVIRRDQSVVYT 206
Query: 615 GEL 623
G++
Sbjct: 207 GDV 209
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +3
Query: 363 LKVFDCRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 542
+K+F + +K + +P+E+M P + P K H + ++R +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204
Query: 543 HLYTLIVKP 569
+L ++KP
Sbjct: 205 YLLNFLLKP 213
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 480 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVES 614
S + K H KK +D Y+H+Y + P + + + ++ ES
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPES 181
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 177 KFKLTAGKFYNDAEADKGLQTSEDARFYALSRKFKPFSNEGKPLVVQ 317
K LT Y++ D G+ FY + P S +PLVV+
Sbjct: 578 KTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHPTDPISYRVEPLVVK 624
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 5.2
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Frame = +3
Query: 351 GGGYLKVFDCRLDQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 518
G +LKV + + M ETP +I++ + G+ +H K + KK++
Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673
Query: 519 R--CKDDVYTHLYTLIVKPDNTYEVLIDN-EKVESGEL 623
CK+D + LY+ D E L+++ E+V S EL
Sbjct: 674 LLFCKEDEF--LYS-----DQENEDLLESFERVISEEL 704
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -1
Query: 473 HVNLLCTRTTDIRPKHNLVGCLAMHVLLVQSTVEYLQVTASAVDVLFVL 327
H ++ T + +P H LV + + + QVT S + VLF +
Sbjct: 1908 HPDISLNMTPNFKPSHELVQLINSSPFYRKHIISVHQVTRSDLHVLFAI 1956
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 229 VYRHLKTRGSTPYRGNSSHSA 291
++R LKTRG+TP G HS+
Sbjct: 338 LFRALKTRGNTPKYGIIYHSS 358
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 498 HLIKKDIRCKDDVYTHLYTLI--VKPDNTYEVLIDNEKVESGE 620
HL C + T+L+ L V P YE L++ EK+E E
Sbjct: 840 HLTSDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEE 882
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 498 HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE 611
H I + + +++ + HL TL KPD+ ++ID E +E
Sbjct: 686 HTINQ-LSSREEAHNHLLTLRNKPDSC--LIIDGESME 720
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 192 AGKFYNDAEADKGLQTSEDARFYALSRKFKPFSNE 296
A F + +E+ KGL +SE Y+L P SN+
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSLKASHDP-SNQ 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,143
Number of Sequences: 5004
Number of extensions: 55512
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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