Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G13
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)             144   7e-35
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                75   6e-14
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      30   1.8  
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)                   29   4.1  
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_45205| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_45201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_16185| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_42600| Best HMM Match : Calx-beta (HMM E-Value=8.3e-07)             27   9.6  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score =  144 bits (348), Expect = 7e-35
 Identities = 67/95 (70%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
 Frame = +3

Query: 87   NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 266
            N  V F EKF D SWE  WV S   G + GKFK TAGKFY DAEADKG+QTSEDA+FY +
Sbjct: 753  NPVVHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKFYGI 812

Query: 267  SRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLK 368
            S KF KPF+NEGK LV+QFSVKHEQ+IDCGGGY K
Sbjct: 813  SAKFEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 35/58 (60%), Positives = 41/58 (70%)
 Frame = +3

Query: 459 KKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEAD 632
           K + + FS K + ++       KDD  THLYTLIV+PDNTYEV IDNEKVESGELE D
Sbjct: 825 KTLVIQFSVKHEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKIDNEKVESGELEKD 882


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 43/95 (45%), Positives = 54/95 (56%), Gaps = 10/95 (10%)
 Frame = +3

Query: 378 CRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKDIRCK--------- 527
           C L Q+    +TPY IMFGPD CG   +K+H IF +K  KN  I++    K         
Sbjct: 28  CHLFQESFGDKTPYTIMFGPDKCGED-RKLHFIFRHKNPKNGTIEEKHAKKPTGNYNSVF 86

Query: 528 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEAD 632
           D   THL+TL+V+PDNT+EV ID E V  G L  D
Sbjct: 87  DGKKTHLFTLVVRPDNTFEVFIDQESVNKGSLLED 121


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 352 PQSMSCSCFTLNCTTKGLP-SLLNGLNFLDRA 260
           P + SC CF + C+ + +P S+L  +++L RA
Sbjct: 150 PIACSCRCFPITCSCRCVPQSMLMSMSYLSRA 181


>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
          Length = 551

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 513 DIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEAD 632
           D+ CKDD         V  D T E L+D+ +V+S +L  D
Sbjct: 485 DVSCKDDKNRTALHWAVGQDKTIEGLLDDPRVQSLQLVND 524


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = -2

Query: 355 PPQSMSCSCFTLNCTTKGLPSLLNG-LNFLDRA*NLASSDVCKPLSASASL*NFPAVNLN 179
           P +  SC C  +   T GLP L++G +  +        S    P   S SL +   V   
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHGTVALISFRRKRTLSGGSLPRGRSRSL-SSDRVGTR 487

Query: 178 LPNSFPGCSLYTQFDSHESSENFSSKNTSQ 89
           LP++  G +         S+ +  S+ +SQ
Sbjct: 488 LPSARKGSASKIGIPRTSSTGSLGSRRSSQ 517


>SB_45205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
 Frame = +3

Query: 195 GKFYNDAEA-DKGLQTSEDARFYALSRKFKPFSNEGK---PLVVQFSVKHEQDIDCGGGY 362
           GK +N + A    L+T    + Y      + FS  GK    LV+    K  +  DCG  Y
Sbjct: 168 GKCFNQSGALTTHLRTHTGQKPYKCDECGECFSESGKLKRHLVIHTGEKPHKCDDCGKRY 227

Query: 363 LKVFDCRLDQKDMHGETPYE 422
               D +   +   GE PYE
Sbjct: 228 TLSGDLKTHLRIHTGEKPYE 247


>SB_45201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
 Frame = +3

Query: 195 GKFYNDAEA-DKGLQTSEDARFYALSRKFKPFSNEGK---PLVVQFSVKHEQDIDCGGGY 362
           GK +N + A    L+T    + Y      + FS  GK    LV+    K  +  DCG  Y
Sbjct: 168 GKCFNQSGALTTHLRTHTGQKPYKCDECGECFSESGKLKRHLVIHTGEKPHKCDDCGKRY 227

Query: 363 LKVFDCRLDQKDMHGETPYE 422
               D +   +   GE PYE
Sbjct: 228 TLSGDLKTHLRIHTGEKPYE 247


>SB_16185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 470 VNLLCTRTTDIRPKHNLVGCLAMHVLLVQSTVEYLQVTASAVDVLFVLHTELY 312
           +NLL    T   P  + V CLAM+  L Q+ ++Y     + + +  V  T+LY
Sbjct: 13  LNLLIRSQTPY-PLGHAVTCLAMNDYLEQNVIDYHYGMQNEIIITMVCKTKLY 64


>SB_42600| Best HMM Match : Calx-beta (HMM E-Value=8.3e-07)
          Length = 424

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/81 (22%), Positives = 34/81 (41%)
 Frame = +3

Query: 108 EKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYALSRKFKPF 287
           EK +  S E ++ +S + GK     K      Y  + A+ G+  S +    ++ +K  PF
Sbjct: 270 EKVNSSSGEGDY-FSWYSGKNITLPKGKNYTTYTVSVANDGVPESNETFTISMQKKSHPF 328

Query: 288 SNEGKPLVVQFSVKHEQDIDC 350
              G P     ++  +  + C
Sbjct: 329 ITFGTPTTTTITIIDDDKVTC 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,040,997
Number of Sequences: 59808
Number of extensions: 431018
Number of successful extensions: 1059
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)