Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G13
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   243   7e-65
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   243   7e-65
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    95   3e-20
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    30   1.2  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    30   1.2  
U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    29   2.8  
Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    29   3.7  
U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astaci...    28   6.4  
Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  243 bits (595), Expect = 7e-65
 Identities = 110/183 (60%), Positives = 140/183 (76%), Gaps = 1/183 (0%)
 Frame = +3

Query: 87  NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 266
           + EV+F+E+F+D SWE  WV S+H   +FG FKL+AGKF++    D+G+QTS+DA+FY+ 
Sbjct: 14  SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSR 72

Query: 267 SRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDI 443
           + KF K FSN+GK LV+Q++VKHEQ IDCGGGY+KV     D  D HGETPY +MFGPDI
Sbjct: 73  AAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDI 132

Query: 444 CGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGEL 623
           CGP T++VHVI +YKG+N LIKK+I CK D  THLYTLI+  DNTYEV ID E  ++G L
Sbjct: 133 CGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSL 191

Query: 624 EAD 632
           E D
Sbjct: 192 EED 194


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  243 bits (595), Expect = 7e-65
 Identities = 110/183 (60%), Positives = 140/183 (76%), Gaps = 1/183 (0%)
 Frame = +3

Query: 87  NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 266
           + EV+F+E+F+D SWE  WV S+H   +FG FKL+AGKF++    D+G+QTS+DA+FY+ 
Sbjct: 14  SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSR 72

Query: 267 SRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDI 443
           + KF K FSN+GK LV+Q++VKHEQ IDCGGGY+KV     D  D HGETPY +MFGPDI
Sbjct: 73  AAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDI 132

Query: 444 CGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGEL 623
           CGP T++VHVI +YKG+N LIKK+I CK D  THLYTLI+  DNTYEV ID E  ++G L
Sbjct: 133 CGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSL 191

Query: 624 EAD 632
           E D
Sbjct: 192 EED 194


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 13/152 (8%)
 Frame = +3

Query: 216 EADKGLQTSEDARFYALSRKFK-PFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFD--CRL 386
           E D GL     AR +A++ K   PF+ +    VVQ+ +K E+  +CGGGYLK+       
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166

Query: 387 DQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDV 536
           D  +   +T Y IMFGPD CG  T KVH+IF YK   +    +              DD 
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225

Query: 537 YTHLYTLIVKPDNTYEVLIDNEKVESGELEAD 632
            THL+TL+VKP   Y V +D + +  G + +D
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSD 257


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 492   KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 614
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 492   KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 614
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 402 ACPSGPVYSRIPSGNRLRSRCPVRASH*TVPPKVCPH 292
           +C S P+   I +GN    RCP  +S  +V P+  P+
Sbjct: 196 SCTSSPIPPVIMNGNGKSERCPSTSSSSSVSPRNAPN 232


>Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical
           protein ZK792.8 protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 163 PGCSLYTQFDSHESSEN-FSSKNTSQFID 80
           P C+L  QF+S E  +N     N SQFID
Sbjct: 443 PSCALCFQFESREQFDNDMRQLNLSQFID 471


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
           protein F55F10.1 protein.
          Length = 4368

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 148 YTQFDSHESSENFSSKNTSQFIDEIANKLAIASTADFI 35
           +T+F     ++NF SKN  +FID +   L+     D++
Sbjct: 437 FTKFYMEVFTKNFDSKNNQKFIDNLEKCLSSGRFKDYL 474


>U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astacin
            protease protein39 protein.
          Length = 951

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 362  VTASAVDVLFVLHTELYHQRFALIAEWLEFPR*GVEPRVF 243
            +T++  ++L ++HT+   +    +AE+ E PR     R F
Sbjct: 894  ITSTGPELLLIMHTDNAEEEKGFVAEYREAPRSSSTKRTF 933


>Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical
           protein R17.3 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 265 YRGNSSHSAMRAN--LWWYSSV*STNRTSTAEAVT*RYSTVDWTRRTCMAR 411
           YR N + S +R N   W   +V    + +T   V   + T+DW  R C++R
Sbjct: 316 YRHNKTRSKIRRNNIYWDLPNVAEKMKKATYYCV---HYTIDWVNRNCVSR 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,575
Number of Sequences: 27780
Number of extensions: 324495
Number of successful extensions: 897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)