Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G11
(294 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 1.3
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 26 1.3
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 25 3.1
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 25 3.1
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 25 3.1
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 24 4.0
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 24 4.0
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 24 4.0
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 24 5.3
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 24 5.3
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 24 5.3
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 24 5.3
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 24 5.3
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 23 7.1
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 23 9.3
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 1.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 139 WMWNSFFYRSSNNGMCT 89
WMWNSF S NG T
Sbjct: 421 WMWNSFRGASDENGEVT 437
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 1.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 15 RRRMCV*ESIIQQTMVRTA*KVPKTVHIP 101
R+ CV ESI ++ T K+P T H+P
Sbjct: 31 RKSRCVVESIGNPCLLCTQLKIPCTYHLP 59
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 3.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 223 YKICIRCCYHQPNKRNVMSALHIVGDVIWMWNSFFY 116
Y I RC + + + + IVG W+W+S F+
Sbjct: 124 YHIMRRCIPDEHPAKRLCLSWAIVGMNAWVWSSVFH 159
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 3.1
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 81 VPFM-QSGPLFVVLYSPKRTFFGVPSI 4
VP++ + G F VLYSP+ T P++
Sbjct: 239 VPYLTEIGQSFAVLYSPELTSLNFPNL 265
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 3.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -3
Query: 172 MSALHIVGDVIWMWNSFFY 116
M A +V D W W FF+
Sbjct: 259 MDAHRVVRDYAWYWGDFFF 277
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 24.2 bits (50), Expect = 4.0
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 193 QPNKRNVMSALHIVGDVIWMWNSFFYRSSNNGMCTV-FGTFHAVRTI 56
+P+K N+MS + G + N+ +R +G+ V G +++++ I
Sbjct: 567 KPSKHNIMSFCILQGKIEVTVNATTFRMKKDGVFIVPRGNYYSIKNI 613
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 24.2 bits (50), Expect = 4.0
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = -3
Query: 148 DVIWMWNSFFYRSSNNGMCTVFGTFHAVR 62
D++W W ++ N M + G+F R
Sbjct: 209 DIVWEWKEEYHNRIKNQMSRLGGSFDWTR 237
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 24.2 bits (50), Expect = 4.0
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 126 VFSIGAVTTGCAQSLVPFM-QSGPLFVVLYSPKR 28
V ++GA+ GC +V ++ + P F+ L K+
Sbjct: 435 VLAVGAIAEGCMDGMVQYLPELYPYFLSLLDSKK 468
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 23.8 bits (49), Expect = 5.3
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 211 IRCCYHQPNKRNVMSALHIVG 149
+RC +QP+ N ++ +H+ G
Sbjct: 66 LRCIGYQPSDLNRLNVIHVAG 86
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 23.8 bits (49), Expect = 5.3
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +2
Query: 50 TNNGPDCMKGTKDCAHPVVTAPIEKTIP 133
TN G G + + P TAP+E P
Sbjct: 266 TNQGMSVSPGVETTSSPFFTAPVEPNQP 293
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 23.8 bits (49), Expect = 5.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 195 ISLISAMSCLPCTSLGM*SGCGIVFSIGAVT 103
ISL++ P S+ + GCG+ GAVT
Sbjct: 157 ISLVAISHSAPLRSICL-LGCGVTTGFGAVT 186
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 23.8 bits (49), Expect = 5.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = +2
Query: 101 VVTAPIEKTIPHPDYIPNDVQG 166
++ +P T+P P Y+ N + G
Sbjct: 458 IMRSPTISTVPPPKYLSNSING 479
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 23.8 bits (49), Expect = 5.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 92 AHPVVTAPIEKTIPHPDYIPNDVQGRHDIA 181
A P+ P + I P Y N+ QG HDIA
Sbjct: 554 ATPLGLKP-DYNIDWPPYAINNEQGNHDIA 582
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 23.4 bits (48), Expect = 7.1
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 281 SKICPGVV-AYNPKTVNRWAVQNLYT 207
+ +C ++ +Y PK + W V LYT
Sbjct: 54 TNVCVHIIHSYFPKDADYWNVDKLYT 79
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 23.0 bits (47), Expect = 9.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 196 GNSTVYRFCTAHLFTVFGLYATTPGQIL 279
G VY FC+ ++TVF + P I+
Sbjct: 145 GRKPVY-FCSIFVYTVFNISCALPRNIV 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,105
Number of Sequences: 5004
Number of extensions: 29024
Number of successful extensions: 76
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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