Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G11
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 28 1.5
03_05_0583 - 25838016-25838684 27 2.0
07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290... 27 2.6
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462... 26 4.6
10_02_0153 + 5915219-5915713,5916129-5916302,5916412-5916705 25 8.0
06_03_0756 + 24244313-24244999 25 8.0
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910... 25 8.0
02_05_0562 - 29970207-29970224,29970290-29970364,29971083-299714... 25 8.0
02_01_0094 - 667361-668962 25 8.0
02_01_0093 + 655420-657021 25 8.0
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 80 TKDCAHPVVTAPIEKTIPHPDYIPNDVQGRHDIALI 187
TK C V TAPI KTI + Y D G+ D+ L+
Sbjct: 427 TKHCTRAVYTAPI-KTISNQKY--RDFCGKFDVGLL 459
>03_05_0583 - 25838016-25838684
Length = 222
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 221 VRPICLPSLDYTQQPPGRFWXMYV 292
V P LPS D Q PG+ W +YV
Sbjct: 37 VWPAALPSGDGNQLDPGQSWAVYV 60
>07_03_0502 +
18826595-18826660,18826815-18826885,18828963-18829056,
18829575-18831521
Length = 725
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 35 GEYNTTNNGPDCMKGTKDCAHPVVTAPIEKTIPHPDYIPNDVQGRHD 175
G++ +N G CMKGT P V EK P+P ++ +V G D
Sbjct: 541 GKFVVSNLG--CMKGTSQVPDPKVLNHWEK--PNPGWMKLNVDGSFD 583
>05_01_0536 -
4622767-4622865,4623550-4623673,4624571-4624685,
4624784-4625028,4625081-4625316
Length = 272
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 157 IVGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIV 53
+VGDV W ++ F +S G C FG+F + ++
Sbjct: 192 LVGDVPWKYSKFLEINSIPGSCH-FGSFCCIFALI 225
>10_02_0153 + 5915219-5915713,5916129-5916302,5916412-5916705
Length = 320
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 112 SYRKNYSTSRLHPQRC 159
S+ +N S+SR HP RC
Sbjct: 5 SFTRNESSSRWHPHRC 20
>06_03_0756 + 24244313-24244999
Length = 228
Score = 25.4 bits (53), Expect = 8.0
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +2
Query: 89 CAHPVVTAPIEKTIPHPDYIPNDVQGRHDIALIRLMVTAPYTDFVRPICLPSLDYTQQPP 268
C P A K DY+P +++ DIAL+ L T F P P QQPP
Sbjct: 102 CCSPTTAAG--KVSDIVDYLPVELELLSDIALLHLNSTR----FCHPPLPPRARPQQQPP 155
>03_06_0520 -
34487664-34488274,34488785-34488974,34489585-34491045,
34491149-34491163
Length = 758
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 20 KNVRLGEYNTTNNGPDCMKGTKDCAHP 100
+ ++ E++TTN G + GTKD P
Sbjct: 211 RKMKQAEFSTTNRGSQNLLGTKDINVP 237
>02_05_0562 -
29970207-29970224,29970290-29970364,29971083-29971441,
29971572-29971713,29971906-29972025,29972139-29972216,
29972330-29972429,29972522-29972571,29972827-29972904,
29973624-29973751,29973776-29973977,29974045-29974144,
29974236-29974551,29974645-29974690,29975526-29975622,
29977254-29977258,29977643-29977708,29978631-29978690,
29979167-29979272,29979513-29979658,29980731-29980813,
29980951-29981056,29996243-29996266,29996378-29996438,
29996467-29996750,29996914-29997096
Length = 1010
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 116 IEKTIPHPDYIPNDVQGRHDIALIR 190
I + P P ++PND +G D +++
Sbjct: 853 INRVSPEPGHVPNDGEGNADHGILK 877
>02_01_0094 - 667361-668962
Length = 533
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = -3
Query: 136 MWNSFFYRSSNNGMCTVFGTFHAVRTIVCCIIL 38
+WN + +++ C + G + T V C++L
Sbjct: 353 LWNIWILQTAGGAFCLLLGRASTLPTSVVCMVL 385
>02_01_0093 + 655420-657021
Length = 533
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = -3
Query: 136 MWNSFFYRSSNNGMCTVFGTFHAVRTIVCCIIL 38
+WN + +++ C + G + T V C++L
Sbjct: 353 LWNIWILQTAGGAFCLLLGRASTLPTSVVCMVL 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,408,672
Number of Sequences: 37544
Number of extensions: 193957
Number of successful extensions: 448
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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