Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G10
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66512-2|CAA91323.1|  387|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    28   3.2  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       28   3.2  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       28   3.2  
AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical ...    28   3.2  
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical p...    27   4.2  
Z92831-2|CAB07368.2|  861|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    26   9.7  
AC024791-34|AAF60670.2|  440|Caenorhabditis elegans Hypothetical...    26   9.7  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    26   9.7  

>Z66512-2|CAA91323.1|  387|Caenorhabditis elegans Hypothetical
           protein F52H3.3 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 148 ISSTCPCFPPAYIPSRLP*CPRTQLA 71
           +S +CPC  P+ IP+RL   P TQ A
Sbjct: 26  LSISCPCDNPSNIPNRLFASPPTQSA 51


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 68  CSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 175
           C+ +C  T+  +R  +CW K   + RN   +   W+
Sbjct: 377 CTTMCEETNVLTRAEVCWDKFDMNYRN-QCMNGQWQ 411


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 68  CSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 175
           C+ +C  T+  +R  +CW K   + RN   +   W+
Sbjct: 377 CTTMCEETNVLTRAEVCWDKFDMNYRN-QCMNGQWQ 411


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 68  CSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 175
           C+ +C  T+  +R  +CW K   + RN   +   W+
Sbjct: 377 CTTMCEETNVLTRAEVCWDKFDMNYRN-QCMNGQWQ 411


>AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical
           protein Y20C6A.2 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = -1

Query: 254 TLTACS----ICNAFV*TKTSPRGSMPILKV--SMNFVTTSDFEYLSVF 126
           T TAC     +C  F   K++ + ++  L V  S NFV++ DFE L++F
Sbjct: 437 TQTACEFQNFVCQKFTDLKSAKKCTLNDLLVMESQNFVSSIDFEELNLF 485


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
            T28F3.5 protein.
          Length = 1679

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 19   DVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENTDKYSKSDV 156
            DV +       L+ +V   + Y  +K VA    +  N+D Y  SD+
Sbjct: 925  DVSISNCIDQALIEFVNYSSEYSKLKFVANRIKIANNSDNYIVSDI 970


>Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical
           protein R10D12.10 protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = +2

Query: 173 RPSKWACYRVVRSSFTQMRCKWNRPLKFSAYCTSPRTMTTS 295
           RP     Y ++ +  T M  KW  P+ F      P   + S
Sbjct: 277 RPDYGKIYEILAAKMTSMGVKWTDPMDFDLQADKPNYFSKS 317


>Z92831-2|CAB07368.2|  861|Caenorhabditis elegans Hypothetical
           protein F22G12.4 protein.
          Length = 861

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 278 LAKYSMRKTLTACSICNAFV*TKTSPR 198
           +AKY   K +  C +C   + T T+PR
Sbjct: 834 IAKYGEEKRVRVCDVCAHVISTGTAPR 860


>U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical
           protein B0222.1 protein.
          Length = 285

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 24/61 (39%), Positives = 29/61 (47%)
 Frame = -1

Query: 200 RGSMPILKVSMNFVTTSDFEYLSVFSSSIYSLATSLMSSYTVGCST*FKSFMMQISFIFT 21
           RGS      S +F ++S     S FSSS  S  TS  SSY  G +T + S   Q  F  T
Sbjct: 29  RGSSGARSSSSSFSSSSSRSSGSSFSSSSSSRPTSGTSSYRSG-NTQYSSNFRQNVFHTT 87

Query: 20  S 18
           S
Sbjct: 88  S 88


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
            repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
 Frame = +2

Query: 89   TSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKWACYRVVRSSFTQMRCKWNRP-LKFS-- 259
            T R+  G +C  +       P+      RPS  A Y+           KW R  ++F+  
Sbjct: 1714 TVRQPNGELC--EVAQKMLEPVDPGPGGRPSALAAYKAAAD-------KWKRDSMEFACR 1764

Query: 260  AYCTSPRTMTTSSKXXXXXXXXXXXXCSYMLSLL 361
            AYCTS + ++  S+            C++ LSL+
Sbjct: 1765 AYCTSRQELSLLSRMKHPNVIGLVGVCTFPLSLV 1798


>AC024791-34|AAF60670.2|  440|Caenorhabditis elegans Hypothetical
           protein Y47G6A.25 protein.
          Length = 440

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +1

Query: 55  LNYVLQPTVYEDIKEVAREYMLEENTDKYSKSDVVTKF-METFKMGMLPRGEVFVHTNAL 231
           L ++L P    D+KE+ RE ++ E   K S+ +++ +F  + FK+ +  + ++  H   +
Sbjct: 187 LRFLLCPA---DLKELNRE-IIAEKRQKMSEKEIICRFGSDKFKIKLFKKQKIGSHVTLI 242


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
            kinase protein.
          Length = 2393

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
 Frame = +2

Query: 89   TSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKWACYRVVRSSFTQMRCKWNRP-LKFS-- 259
            T R+  G +C  +       P+      RPS  A Y+           KW R  ++F+  
Sbjct: 1712 TVRQPNGELC--EVAQKMLEPVDPGPGGRPSALAAYKAAAD-------KWKRDSMEFACR 1762

Query: 260  AYCTSPRTMTTSSKXXXXXXXXXXXXCSYMLSLL 361
            AYCTS + ++  S+            C++ LSL+
Sbjct: 1763 AYCTSRQELSLLSRMKHPNVIGLVGVCTFPLSLV 1796


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,230,719
Number of Sequences: 27780
Number of extensions: 220316
Number of successful extensions: 581
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)