Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G10
(422 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55480.1 68418.m06910 glycerophosphoryl diester phosphodieste... 31 0.43
At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein bet... 30 0.56
At4g26690.1 68417.m03846 glycerophosphoryl diester phosphodieste... 29 0.98
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 28 2.3
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 28 2.3
At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containi... 28 3.0
At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase, puta... 28 3.0
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 28 3.0
At1g66970.1 68414.m07615 glycerophosphoryl diester phosphodieste... 28 3.0
At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase / lon... 27 5.2
At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein bet... 27 5.2
At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7)... 27 5.2
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam... 27 5.2
At1g19570.1 68414.m02437 dehydroascorbate reductase, putative si... 27 5.2
At1g19550.1 68414.m02435 dehydroascorbate reductase, putative si... 27 5.2
At5g51660.1 68418.m06405 cleavage and polyadenylation specificit... 27 6.9
At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi... 27 6.9
At3g47040.1 68416.m05108 glycosyl hydrolase family 3 protein bet... 27 6.9
At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger) fa... 27 6.9
At1g18260.1 68414.m02277 suppressor of lin-12-like protein-relat... 27 6.9
At5g27290.1 68418.m03258 expressed protein predicted proteins, A... 26 9.1
At5g24690.1 68418.m02918 expressed protein 26 9.1
At4g14850.1 68417.m02282 pentatricopeptide (PPR) repeat-containi... 26 9.1
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 26 9.1
>At5g55480.1 68418.m06910 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 766
Score = 30.7 bits (66), Expect = 0.43
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Frame = +1
Query: 76 TVYEDIKEVAREYM--LEENTDKYSKSDVVTK--FMETFKMGMLPRGEVFVHTNALQMEQ 243
TVY+ ++E R+ + E+ K++ + V++K T + + ++ Q+
Sbjct: 562 TVYK-VEETIRDILDTAIEDIKKFADAVVISKKSVFPTSESFTTGQTKLVERLQKFQLPV 620
Query: 244 AVKVFRILYFAKDYDYFIKTACWLRER-----INGGMFVYALTAAVFHRSDCVGITLPAP 408
V+VFR + ++ +D+F + ING + + LTAA + R+ C+ P
Sbjct: 621 YVEVFRNEFVSQPWDFFADATVEINSHVTGAGINGTITEFPLTAARYKRNSCLTRKDVPP 680
Query: 409 YEI 417
Y I
Sbjct: 681 YMI 683
>At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein
beta-glucosidase, common nasturtium, PIR:T10521
Length = 626
Score = 30.3 bits (65), Expect = 0.56
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 384 AVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAENF 250
AV+ D ++ IY P F A FD ++ +GE YAE F
Sbjct: 476 AVKKTVDPKTQVIYNQNPDTNFV-KAGDFDYAIVAVGEKPYAEGF 519
>At4g26690.1 68417.m03846 glycerophosphoryl diester
phosphodiesterase family protein weak similarity to
glycerophosphodiester phosphodiesterase [Borrelia
hermsii] GI:1399038; contains Pfam profile PF03009:
Glycerophosphoryl diester phosphodiesterase family
Length = 759
Score = 29.5 bits (63), Expect = 0.98
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Frame = +1
Query: 112 YMLEENTDKYSKSDV--VTKFMETF---KMGMLPRGEVFVHTNA-----LQMEQA---VK 252
Y +EEN S + + KF + K+ + P + F+ T LQ Q V+
Sbjct: 557 YKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQTNVVEKLQKSQLPVYVE 616
Query: 253 VFRILYFAKDYDYFIKTACWLRERI-----NGGMFVYALTAAVFHRSDCVGITLPAPY 411
+F+ + ++ YD+F + I NG + + TAA + R+ C+G PY
Sbjct: 617 LFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARYKRNLCLGRKETIPY 674
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 205 EVFVHT-NALQMEQAVKVFRILYFAKDYDYFIKTACWLRERIN 330
E F HT N ++ + FR+ F D +I T C+ R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 205 EVFVHT-NALQMEQAVKVFRILYFAKDYDYFIKTACWLRERIN 330
E F HT N ++ + FR+ F D +I T C+ R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537
>At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 620
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 151 DVVTKFMETFKMGMLPRGEVFVHT-NALQMEQAVKVFRILYFAKDYDYFIK 300
+ ++KFME KMG+ P F A V+ ++++++ + DY +K
Sbjct: 331 EAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLK 381
>At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase,
putative / long-chain acyl-CoA synthetase, putative
similar to acyl-CoA synthetase (MF7P) gi:1617270 from
Brassica napus
Length = 666
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -1
Query: 203 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQIS 33
P GSM I+ N + EY++V + ++YS + S + G S F+SF++ I+
Sbjct: 508 PNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEVIESIWVYGNS--FESFLVAIA 563
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/52 (23%), Positives = 22/52 (42%)
Frame = +2
Query: 74 QLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKWACYRVVRSSFTQMR 229
Q+C+ R + G CW K R + P+ L P Y + + +++
Sbjct: 783 QVCSDLERDANGKACWSKKRKFDKIPLGLNTLVAPEDVCSYESMLAGLFRLK 834
>At1g66970.1 68414.m07615 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family
Length = 763
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 232 QMEQAVKVFRILYFAKDYDYFIKTACWLRERI-----NGGMFVYALTAAVFHRSDCVGIT 396
Q+ V++FR + ++ YD+F + I NG + + TAA + R+ C+G
Sbjct: 617 QLPVYVELFRNEFVSQAYDFFSDATVEINAYIYGAGINGTITEFPFTAARYKRNRCLGRE 676
Query: 397 LPAPY 411
PY
Sbjct: 677 EVPPY 681
>At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to
acyl-CoA synthetase (MF7P) from Brassica napus
[gi:1617270]
Length = 666
Score = 27.1 bits (57), Expect = 5.2
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -1
Query: 203 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQIS 33
P GSM I+ N S EY++V + +IY ++ S + G S F+SF++ I+
Sbjct: 508 PDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNS--FESFLIAIA 563
>At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 608
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 387 DAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAE 256
DA++ +E IYE P + F ++ +GE YAE
Sbjct: 453 DAIKEAVGDETEVIYEKTPSKETLASSEGFSYAIVAVGEPPYAE 496
>At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 418
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 90 HQGSREGIYAGGKHGQV 140
H GS+E +YAGG G V
Sbjct: 316 HVGSKEEVYAGGSRGSV 332
>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1423
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +1
Query: 64 VLQPTVYEDIKEVAREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNALQMEQ 243
++ P+V ED ++ +++ + ++K V+T +FK LP+G +V + LQ ++
Sbjct: 1338 IVSPSVSEDGDNGSKPK--KQHVETFAKELVMTSDEASFKNRRLPKGYFYVPVDCLQEDK 1395
>At1g19570.1 68414.m02437 dehydroascorbate reductase, putative
similar to GB:BAA90672 from (Oryza sativa)
Length = 213
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 206 SPRGSMPILKVSMNFVTTSD 147
SP+G +P+LK+ +VT SD
Sbjct: 55 SPQGKVPVLKIDDKWVTDSD 74
>At1g19550.1 68414.m02435 dehydroascorbate reductase, putative
similar to dehydroascorbate reductase [Arabidopsis
thaliana] gi|10952514|gb|AAG24946
Length = 153
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 206 SPRGSMPILKVSMNFVTTSD 147
SP+G +P+LK+ +VT SD
Sbjct: 19 SPQGKVPVLKIDDKWVTDSD 38
>At5g51660.1 68418.m06405 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to SP|Q9EPU4 Cleavage and
polyadenylation specificity factor, 160 kDa subunit
(CPSF 160 kDa subunit) {Mus musculus}; contains Pfam
profile PF03178: CPSF A subunit region
Length = 1442
Score = 26.6 bits (56), Expect = 6.9
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 18 RCENEGDLHHETLELRTAANCVRGHQGSREGIYAGGKHGQVLEIRCCYEIHGDLQN 185
R + EG+ T ELR RG G +G+Y G LE+ C Y +HG++++
Sbjct: 74 RAQEEGN----TQELRNPKLAKRG--GVMDGVY-----GVSLELVCHYRLHGNVES 118
>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 852
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 117 AGGKHGQVLEIRCCYEIHGDLQN 185
A K+G +LE+R C I+ D++N
Sbjct: 638 ARSKYGSLLEVRQCLAIYQDMRN 660
>At3g47040.1 68416.m05108 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 636
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 387 DAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAE 256
DA++ +E IYE P F ++ +GE YAE
Sbjct: 478 DAIKEAVGDKTEVIYEKTPSEETLASLQRFSYAIVAVGETPYAE 521
>At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 325
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 184 MGMLPRGEVFVHTNALQMEQAVKVFRILYFAKDY-DYF 294
+G+ +V+ ++ Q E+ V + + YF DY DYF
Sbjct: 151 LGLEDEQDVYGEASSSQFEEVVPFYGLPYFRDDYNDYF 188
>At1g18260.1 68414.m02277 suppressor of lin-12-like protein-related
/ sel-1 protein-related similar to Sel-1 homolog
precursor (Suppressor of lin-12-like protein)
(Sel-1L)(SP:Q9UBV2) {Homo sapiens}
Length = 678
Score = 26.6 bits (56), Expect = 6.9
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 162 RNNIGFRVLVRVF--LQHIFPRDFLDVLVHSWLQYVVQEFHDADLLHFHICL 13
R N VLVRV L ++P+ V +W++ VV E +A +L +CL
Sbjct: 591 RRNYADTVLVRVVDSLPEVYPK------VETWIENVVFEEGNATILTLFVCL 636
>At5g27290.1 68418.m03258 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 341
Score = 26.2 bits (55), Expect = 9.1
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +1
Query: 166 FMETFKMGMLPRGEVFVHTNALQMEQAVKVFRILYFAKDYDYFIKTACWLRERINGGMFV 345
F+ + +G+LPRG ALQ E ++ + F DY++ E +N G
Sbjct: 191 FLVAYLVGILPRGYTLSSLEALQKEGSLNIQAGSAFV-DYEFL--------EEVNSG--- 238
Query: 346 YALTAAVFHRSDCVGIT-LPAPYEIY 420
++A + +R C+ + + Y +Y
Sbjct: 239 -KVSATMLNRFSCIALAGVATEYLLY 263
>At5g24690.1 68418.m02918 expressed protein
Length = 521
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 132 RVFLQHIFPRDFLDVLVHSW 73
R+FL IF R F+D +++ W
Sbjct: 165 RMFLAEIFDRKFVDAVLNEW 184
>At4g14850.1 68417.m02282 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 651
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 260 RKTLTACSICNAFV*TKTSPRGSMPILKVSMNFVTTSDFEYLSVFSS 120
+ ++ CS+ A+V + S+ L+ + V TSDF SV S+
Sbjct: 259 KNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSA 305
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 137 LSVFSSSIYSLATSLMSSYTVGCST*FKSFMMQISFIFTSAFM 9
LS F S +++ + + YT S FK F++ + FTS M
Sbjct: 632 LSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISM 674
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,595,472
Number of Sequences: 28952
Number of extensions: 203358
Number of successful extensions: 618
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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