Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G09
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 29 0.26
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 0.81
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 1.1
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 27 1.4
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 4.3
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 4.3
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 5.7
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 5.7
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 25 7.5
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 7.5
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 24 9.9
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 24 9.9
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 24 9.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 9.9
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 29.5 bits (63), Expect = 0.26
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 44 LDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEI 223
L IF+K +++ ++ FES K+ FH ++ W++ D EEV D+QR +
Sbjct: 247 LQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDF--EEVEGDFQRICHL 304
Query: 224 VARHVLGAA 250
R ++ A
Sbjct: 305 YERCLITCA 313
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 0.81
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 38 RFLDIFEKTFVQSLQKGKFESYG-KKID-FHDEKA 136
+FL+I+ +T + L G E G KK++ +HD KA
Sbjct: 606 QFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKA 640
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.1
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +3
Query: 57 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL-- 230
K+L + K + + + +T+ R+ L +T + +C K+ + I DL+ SL
Sbjct: 198 KQLDHFFSYKVTTVHKSYQRFATLLRRHLLDKTAKRYHDLCEKRPYKYITTDLLSPSLTC 257
Query: 231 -AMCSVQHLNHSTSTPSCPVRLTFT 302
A +Q + TS+ S PV L T
Sbjct: 258 FASDILQTVPEYTSSQSSPVLLPAT 282
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 27.1 bits (57), Expect = 1.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 391 IRLQVMLECVKVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 254
I Q L+ + TH NPV EC +S+C L K G E L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 4.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 215 YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 319
Y +ARH L + FD HTF + FY T RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 4.3
Identities = 17/78 (21%), Positives = 28/78 (35%)
Frame = +3
Query: 81 RKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNH 260
RK R+ ++ + + L + IC Q I L + C L H
Sbjct: 1063 RKIAHFESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKH 1122
Query: 261 STSTPSCPVRLTFTKPHF 314
S+S P C +L ++
Sbjct: 1123 SSSCPMCKTKLNKNNAYY 1140
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 5.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 56 EKTFVQSLQKGKFESYGKKIDFHDEKAIN 142
EKT V+S+ K + + G DFH E A N
Sbjct: 12 EKTHVESIVKFEDSNRGTITDFHIETANN 40
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.0 bits (52), Expect = 5.7
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +3
Query: 249 HLNHSTSTPSCPVRLTF--TKPHFETLHSISYITGLWVTLT 365
HL S STPS LTF T + T H LW L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 128 EKAINFVGNYWQENADLYEEEVTKDYQRSYEIVARHVLG 244
+K +N N W L+E+E+ + + +++ AR V G
Sbjct: 131 QKILNAGQNLWFNEIILFEDELADNGKSMFDVRARVVQG 169
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 7.5
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +2
Query: 5 NLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYE 184
NL+S + Y + + +++ S GK+ Y ++ + D + N G Y + N Y
Sbjct: 161 NLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNNKDGGYRRNN---YR 217
Query: 185 EEVTKDYQRSY 217
+ + Y+ SY
Sbjct: 218 DRDSNRYRNSY 228
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 7.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 135 QLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTP-SCPVRL 293
+L S TI P+C++ K + +N L+L+ + L TS P CP++L
Sbjct: 228 ELNASVTISG-IPVCIRSKEKMFLNPDCALTLSFICI-FLAQYTSIPLPCPLQL 279
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.2 bits (50), Expect = 9.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 38 RFLDIFEKTFVQSLQKGKFES 100
RF+DIFE+TF S + KF S
Sbjct: 528 RFIDIFEQTF-SSKKNAKFIS 547
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 158 WQENADLYEEEVTKDYQRSYE 220
WQ++ EEE+ + YQ+S++
Sbjct: 170 WQQSIKSIEEELVEKYQQSWK 190
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +2
Query: 350 VGYLNAFKHYLKPYPREKLHFVGVXINDVVVEK 448
+ ++N HYL+ R F+ ND+ E+
Sbjct: 96 ISFVNQLNHYLRKAERNGYDFLSEGQNDITPEE 128
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 302 QTALRDPAFYQLYYRIVGYLNAFKH 376
+TAL + F+Q YYR + LN H
Sbjct: 277 KTALEEFNFWQFYYRSLSRLNDQLH 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,016
Number of Sequences: 5004
Number of extensions: 39032
Number of successful extensions: 142
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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