Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G09
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     29   2.4  
08_02_0216 + 14390739-14390847,14390983-14391017,14391112-143911...    28   3.2  
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    27   7.4  
03_01_0600 - 4419917-4419967,4420081-4420287,4420386-4420560,442...    27   9.8  

>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 96  NRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 227
           NR+ R L++  +++    E I +    CMKK+   ++N L  +S
Sbjct: 39  NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82


>08_02_0216 +
           14390739-14390847,14390983-14391017,14391112-14391153,
           14391253-14391346,14391476-14391672,14392407-14392424,
           14392938-14393182,14393300-14393657,14393741-14394316,
           14395172-14395447
          Length = 649

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +2

Query: 239 LGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYYRIVGYLNAFKH--YLKPYPREKLHF 412
           L A+  P  K     S +D+Y    R  +   L YR   YL+   H  +  P     LH 
Sbjct: 410 LNASYSPVLKQLESQSMIDYYFRTHRANSDSNLKYRNPKYLSILNHLRFYLPEIYPNLHK 469

Query: 413 VGVXINDVVVEKLVT 457
           +    +DVV++K +T
Sbjct: 470 IVFLDDDVVIKKDLT 484


>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 171 PICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLT 296
           PICM       +         MC V HL+H +  P C   LT
Sbjct: 61  PICMAVIKDAFLTACGHSFCYMCIVTHLSHKSDCPCCGNYLT 102


>03_01_0600 -
           4419917-4419967,4420081-4420287,4420386-4420560,
           4420677-4420708,4421179-4421280,4421406-4421552
          Length = 237

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 66  SYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRII 206
           +Y   R+       RK+ +   R L+ +  +  +TP  MK+K +RII
Sbjct: 11  AYEAARERTVEENKRKMEALNLRHLSAAIAVAPKTPSPMKQKRRRII 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,556,413
Number of Sequences: 37544
Number of extensions: 234111
Number of successful extensions: 614
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)