Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G09
(465 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 29 1.4
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 29 1.9
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41) 27 5.8
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 27 7.7
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 27 7.7
>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 228 LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 320
L+ CS+Q L +T T P+R++F++PH T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +3
Query: 249 HLNHSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*SLILERNFISSAXKS 428
+L HST T S L T T +++++T + TLTH +IT S I
Sbjct: 26 NLTHSTLTHSNLTHLNLTHSTL-TYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84
Query: 429 MMLSLRN*SHS 461
+ L+ +HS
Sbjct: 85 LTLTYSTLTHS 95
Score = 28.3 bits (60), Expect = 3.3
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +3
Query: 213 LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*S 386
L L+L ++ HL +ST T S LT T H +++Y T TLTHS++T S
Sbjct: 52 LTHLTLTYSTLTHLTITYSTITHSTLTHLTLT--HL----TLTYSTLTHSTLTHSTLTHS 105
Query: 387 LILERNFISSAXKSMMLSLRN*SH 458
+ S L+ N +H
Sbjct: 106 TLTHSTLTHSTITHSTLTHSNLTH 129
Score = 27.5 bits (58), Expect = 5.8
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +3
Query: 216 MKLSLAMCSVQHLNHSTSTPSCPVRLTFTKP---HFETLH-SISYITGLWVTLTHSSIT* 383
+ L+ + + L H T T S LT T H H +++++T + TLTHS++T
Sbjct: 40 LNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTH 99
Query: 384 SLILERNFISSAXKSMMLSLRN*SHS 461
S + S ++ +HS
Sbjct: 100 STLTHSTLTHSTLTHSTITHSTLTHS 125
>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -2
Query: 134 PFHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRCVDC 3
P H NQ C IC+ G KS KCP L S RC C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Frame = +2
Query: 77 LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 208
L+KGKF+ S K ID E+ F+G+ W ++ DL +++E K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143
>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
Length = 1069
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 92 FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 232
FE Y ++ DEKA ++ Y ++ A + E +RSY + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 57 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAM 236
K + YS K ++ AR S ++ + + + KR KKK++R N MKL+ +
Sbjct: 893 KFVDYSEKAKLRASAQARNSRSPVEVAIEEEKRVAKRKKEQRKKKVRRRKNAAMKLANKL 952
Query: 237 CS 242
S
Sbjct: 953 VS 954
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 287 ALDFYQTALRDPAFYQLYYRIVGYLNAFKHYLKPYPREKLHFVGV 421
AL + ALR P ++Y + L+ FK LK YP H +
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASI 224
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 74 SLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQR 211
+LQ+G S K+++ A+ G+ Q++ ++ E E +DYQR
Sbjct: 499 NLQRGYIASNQDKLEWKVFFAMGKTGDNSQDSRNIREAEEQRDYQR 544
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,916,034
Number of Sequences: 59808
Number of extensions: 288569
Number of successful extensions: 894
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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