Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G09
         (465 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    30   0.67 
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    29   1.2  
At2g45870.1 68415.m05705 expressed protein contains Pfam profile...    29   1.2  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    28   2.7  
At5g15510.1 68418.m01816 expressed protein                             27   4.7  
At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi...    27   4.7  
At1g17460.1 68414.m02141 myb family transcription factor contain...    27   6.2  
At4g10670.1 68417.m01743 transcription elongation factor-related...    27   8.3  
At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR) domai...    27   8.3  
At3g01015.1 68416.m00001 expressed protein ; expression supporte...    27   8.3  

>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger (C3HC4 type RING
           finger) family protein low similarity to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 1648

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 105 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 248
           AR++I T+KR +          P+    +  +++N L+KL  A C  Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 29  EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 148
           EA   LD+  KTFV    + + + +  K  F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
           PF05249: Uncharacterised protein family (UPF0187)
          Length = 410

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +3

Query: 84  KANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHS 263
           K++ + ++ KLIS +K     S+ I +R  +  K+ L    N +   S    S++HL H 
Sbjct: 49  KSDDSPLSEKLISLLKAVPNWSDGIKERR-MQQKRSLYTHENWVRHRS----SLRHLRHV 103

Query: 264 TSTPSCPVRLTFTKPHF 314
           +S+PS  V L+   P F
Sbjct: 104 SSSPSSRVILSLIPPVF 120


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +2

Query: 107 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 205
           +K  FH EKA    G + +E  ++ E    +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278


>At5g15510.1 68418.m01816 expressed protein
          Length = 497

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +2

Query: 110 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 280
           + D+   + ++F+  Y  E      L EEE  +  ++  E+V +    A P P+    F+
Sbjct: 397 EFDYQVAEKMSFIEQYKMERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 450

Query: 281 PSALDFYQTALRDPAFY 331
           P     + TA RDP F+
Sbjct: 451 PRRSSKHPTAPRDPKFH 467


>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 904

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 350 QSCNIADRMQGLEVRFGKSQAHW 282
           Q C++ D++Q L  R  KS  HW
Sbjct: 640 QKCDLQDKLQHLYYRIRKSGIHW 662


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 39  GSWTFLKRLSYSPY 80
           G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530


>At4g10670.1 68417.m01743 transcription elongation factor-related
           low similarity to chromatin-specific transcription
           elongation factor FACT 140 kDa subunit [Homo sapiens]
           GI:5499741
          Length = 470

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/61 (22%), Positives = 33/61 (54%)
 Frame = +3

Query: 51  FLKRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL 230
           +LK +S+      +S+ + +++ S  ++ +       +RT +  ++KLQ + N+   LSL
Sbjct: 61  YLKEVSFRTKDSRHSSDVVQQVKSLRRKVMARESERAERTSLVNQEKLQIVRNNSKPLSL 120

Query: 231 A 233
           +
Sbjct: 121 S 121


>At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 239

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 78  YRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIIND-LMKLSL 230
           ++K   NR   ++    +  + ++ T+G  + IC     + I ND L+KL+L
Sbjct: 155 FKKTCQNRTEDEINLRRRALIDVANTLGYHSTICKANMTKEITNDVLVKLNL 206


>At3g01015.1 68416.m00001 expressed protein ; expression supported
           by MPSS
          Length = 488

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 110 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 280
           + D+   + IN V  Y  E      L EEE  +  ++  E+V +    A P P+    F+
Sbjct: 387 EFDYQVTEKINLVEQYKTERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 440

Query: 281 PSALDFYQTALRDPAF 328
           P   + + T  RDP F
Sbjct: 441 PKRSNKHPTVPRDPKF 456


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,583,142
Number of Sequences: 28952
Number of extensions: 196163
Number of successful extensions: 584
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)