Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G07
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    29   0.56 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.74 
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    28   0.97 
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    27   1.7  
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   6.9  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   6.9  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   9.1  

>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
 Frame = +3

Query: 108 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDXYTNKKAVEEFL 254
           VER+K++ +L Q  D + ++DE YY +  D Y+   EA    +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 439 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 546
           ++ L+ A  L +  YQ        S  +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 123 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVE 245
           K L + +      +   YYK+ K Y  +AN D     K VE
Sbjct: 89  KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -2

Query: 623 ILLFLLYNSIINSLCIVKNTVLHFSAINLK 534
           ++LFL+Y S+++ L  +K  +L+ + + L+
Sbjct: 27  LILFLVYKSVLSKLFFIKYLMLNLTKVGLR 56


>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 6   KTVLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKV----LSLFQDVDQVNVDDE 173
           K ++  A +I   +++  +   +H   +D   V  + QK+      S   D D+  V DE
Sbjct: 28  KLIMKFADMIKNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDE 87

Query: 174 YYKIGKDYDVEA 209
           + +I +++ ++A
Sbjct: 88  FMQIKEEFPMKA 99


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 108 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLK 257
           + R+KK+L+L +  D + V+DE Y   +  D   +++    K     FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 504 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVQEEE 617
           P  F ++D L  +YR+K +D   HD K+    ++ EE+
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED 152


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 411 NEGQFL-YAYYIAVIQRNDTHG 473
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,108
Number of Sequences: 5004
Number of extensions: 51317
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)